DK947403
Clone id YMU02A01NGRL0015_M14
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGGTAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAGTAAAGAAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG
AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCT
CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAA
ATAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P33434
Definition sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
Align length 35
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M14, 5'
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 31 2.3
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 31 2.3
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 31 2.3
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 31 3.1
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c... 30 5.2

>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 31.2 bits (69), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3

Query: 144 WRNNKKTHIFCEDKVFSFS*FSRDTIPQLPKSLRD 40
W NKKT+IF DK + ++ + P PK + D
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 610


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 31.2 bits (69), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3

Query: 144 WRNNKKTHIFCEDKVFSFS*FSRDTIPQLPKSLRD 40
W NKKT+IF DK + ++ + P PK + D
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 608


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 31.2 bits (69), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3

Query: 144 WRNNKKTHIFCEDKVFSFS*FSRDTIPQLPKSLRD 40
W NKKT+IF DK + ++ + P PK + D
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 609


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 30.8 bits (68), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3

Query: 144 WRNNKKTHIFCEDKVFSFS*FSRDTIPQLPKSLRD 40
W NKKT+IF DK + ++ + P PK + D
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIAD 610


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
cuniculus GN=MMP2 PE=2 SV=1
Length = 662

Score = 30.0 bits (66), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3

Query: 144 WRNNKKTHIFCEDKVFSFS*FSRDTIPQLPKSLRD 40
W NKKT+IF DK + ++ + P P+ + D
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIAD 610


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M14, 5'
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -1

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
LK +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283