NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947406
Clone id YMU02A01NGRL0015_M19
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCGAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG
AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTAGTTGAACGGGATCCCT
CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTTCCTGAAAAAAAAAAAA
AATAAAGAACGAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9USN3
Definition sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe
Align length 25
Score (bit) 29.3
E-value 8.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947406|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M19, 5'
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated...    29   8.9  

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated
           protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2
           SV=3
          Length = 777

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 171 VTHSFRELGKIVTKQNCFGTPRNTW 245
           VTHSFR  G +++   CFG  +NTW
Sbjct: 137 VTHSFRGHGGVISAL-CFGKHQNTW 160
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 49
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947406|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M19, 5'
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    33   5.5  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = -2

Query: 185 K*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           K +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 235 KQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283