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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947408
Clone id YMU02A01NGRL0015_M21
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACTGCTCTTAAGAATCGAATCATCTGCAGATTCGGCGGGCTTGTTGTGGGATGGTTGGTT
GGCTCCTTCATTGTACCTGTCGTGCCAATGGCTTTACTGCCTCCGAATTGGAGCCTAGAA
ATCATAACGGCACTGATATCATATGTATTCATGTGGGTTGCATGTACTTTCTTGAAGTAA
GGACACCTTATAGATATTGTATACACGGGCCTCAAAAGGCTGGACTTGCAAGTGGTGGCT
CTAGCACTCATCTATGCCTGTGCTCAAAAGGATGTCCGTTAAATGTTTCAGTAACACACT
TTCTAGAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4I877
Definition sp|Q4I877|NDE1_GIBZE Nuclear distribution protein nudE homolog 1 OS=Gibberella zeae
Align length 72
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947408|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M21, 5'
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4I877|NDE1_GIBZE Nuclear distribution protein nudE homolog 1...    32   0.76 
sp|Q6QGC0|PDLI3_PIG PDZ and LIM domain protein 3 OS=Sus scrofa G...    31   2.2  
sp|Q9YH92|CLDX_DANRE Claudin-like protein ZF4A22 OS=Danio rerio ...    30   2.9  
sp|Q9JKD6|CLD5_RAT Claudin-5 OS=Rattus norvegicus GN=Cldn5 PE=1 ...    30   2.9  
sp|O54942|CLD5_MOUSE Claudin-5 OS=Mus musculus GN=Cldn5 PE=1 SV=2      30   2.9  
sp|Q2SYD4|CRCB_BURTA Protein crcB homolog OS=Burkholderia thaila...    30   3.7  
sp|Q63RN4|CRCB_BURPS Protein crcB homolog OS=Burkholderia pseudo...    30   3.7  
sp|A3NCH2|CRCB_BURP6 Protein crcB homolog OS=Burkholderia pseudo...    30   3.7  
sp|A3NYA3|CRCB_BURP0 Protein crcB homolog OS=Burkholderia pseudo...    30   3.7  
sp|A1V1J1|CRCB_BURMS Protein crcB homolog OS=Burkholderia mallei...    30   3.7  
sp|Q62HU2|CRCB_BURMA Protein crcB homolog OS=Burkholderia mallei...    30   3.7  
sp|A2S9C1|CRCB_BURM9 Protein crcB homolog OS=Burkholderia mallei...    30   3.7  
sp|A3MMS6|CRCB_BURM7 Protein crcB homolog OS=Burkholderia mallei...    30   3.7  
sp|Q66HS7|PDLI3_RAT PDZ and LIM domain protein 3 OS=Rattus norve...    30   3.8  
sp|P31835|CDGT2_PAEMA Cyclomaltodextrin glucanotransferase OS=Pa...    30   3.8  
sp|Q2HJ22|CLD5_BOVIN Claudin-5 OS=Bos taurus GN=CLDN5 PE=2 SV=1        30   4.9  
sp|Q765N9|CLD3_BOVIN Claudin-3 OS=Bos taurus GN=CLDN3 PE=2 SV=1        29   6.4  
sp|P50364|ATP6_ALLMA ATP synthase subunit a OS=Allomyces macrogy...    29   8.3  
sp|O13658|YBCB_SCHPO Uncharacterized transcriptional regulatory ...    29   8.4  

>sp|Q4I877|NDE1_GIBZE Nuclear distribution protein nudE homolog 1
           OS=Gibberella zeae GN=NDE1 PE=3 SV=1
          Length = 583

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = -3

Query: 251 MSARATTCKSSLLRPVYTISIRCPYFKKVHATHMNTYDISAVMISRLQFGGSKAIGTTGT 72
           + AR  + +S L  P  T     P      AT+M     S  + SR +  GS A   TG 
Sbjct: 353 LEARVHSVRSKLPGPTRTPPRASPRTNVYSATNMPA---SITIRSRKRTSGSAASSVTGD 409

Query: 71  MKEPTNHPTTSP 36
              PTN PT++P
Sbjct: 410 DPTPTNIPTSTP 421


>sp|Q6QGC0|PDLI3_PIG PDZ and LIM domain protein 3 OS=Sus scrofa
           GN=PDLIM3 PE=2 SV=1
          Length = 365

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = -3

Query: 251 MSARATTCKSSL-----LRPVYTISIRCPYFKKVHA---THMNTYDISAVMISRLQFGGS 96
           +S  +T C   L     + P   + +  P  K VHA   T M  Y    +M   LQ   S
Sbjct: 153 VSTLSTICPGDLKVAAKMAPNIPLEMELPGVKIVHAQFNTPMQLYSDDNIM-ETLQGQVS 211

Query: 95  KAIGTTGTMKEPTNHPTTSPPNLQMIRFL 9
            A+G T +M EPT    + PP   + R L
Sbjct: 212 TALGETPSMSEPTT--ASVPPQSDVYRML 238


>sp|Q9YH92|CLDX_DANRE Claudin-like protein ZF4A22 OS=Danio rerio
           GN=cldn7 PE=2 SV=1
          Length = 215

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +1

Query: 55  LVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK*GHLIDIVYTGLKRLD--- 225
           L+G  I  ++P   +       IITA+  Y  +W++C +   G     VY  + +LD   
Sbjct: 18  LIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSAL 77

Query: 226 -----LQVVALALIYA 258
                L VVA+ L  A
Sbjct: 78  QATRALMVVAILLTVA 93


>sp|Q9JKD6|CLD5_RAT Claudin-5 OS=Rattus norvegicus GN=Cldn5 PE=1
           SV=2
          Length = 218

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 43  VVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK*GHLIDIVYTGLKRL 222
           +VGW VG  +   +PM  +       I+TA  ++  +W++C     GH+   VY  +  L
Sbjct: 15  LVGW-VGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYESVLAL 73

Query: 223 DLQVVA 240
             +V A
Sbjct: 74  SAEVQA 79


>sp|O54942|CLD5_MOUSE Claudin-5 OS=Mus musculus GN=Cldn5 PE=1 SV=2
          Length = 218

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 43  VVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK*GHLIDIVYTGLKRL 222
           +VGW VG  +   +PM  +       I+TA  ++  +W++C     GH+   VY  +  L
Sbjct: 15  LVGW-VGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYESVLAL 73

Query: 223 DLQVVA 240
             +V A
Sbjct: 74  SAEVQA 79


>sp|Q2SYD4|CRCB_BURTA Protein crcB homolog OS=Burkholderia
           thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
           CIP 106301) GN=crcB PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALI 138
           L+ G+L+G  +V     A LPP W L +IT  +
Sbjct: 42  LIGGYLIGIAVVAFATRAGLPPEWRLFVITGFM 74


>sp|Q63RN4|CRCB_BURPS Protein crcB homolog OS=Burkholderia
           pseudomallei GN=crcB PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALI 138
           L+ G+L+G  +V     A LPP W L +IT  +
Sbjct: 42  LIGGYLIGIAVVAFATRAGLPPEWRLFVITGFM 74


>sp|A3NCH2|CRCB_BURP6 Protein crcB homolog OS=Burkholderia
           pseudomallei (strain 668) GN=crcB PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALI 138
           L+ G+L+G  +V     A LPP W L +IT  +
Sbjct: 42  LIGGYLIGIAVVAFATRAGLPPEWRLFVITGFM 74


>sp|A3NYA3|CRCB_BURP0 Protein crcB homolog OS=Burkholderia
           pseudomallei (strain 1106a) GN=crcB PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALI 138
           L+ G+L+G  +V     A LPP W L +IT  +
Sbjct: 42  LIGGYLIGIAVVAFATRAGLPPEWRLFVITGFM 74


>sp|A1V1J1|CRCB_BURMS Protein crcB homolog OS=Burkholderia mallei
           (strain SAVP1) GN=crcB PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALI 138
           L+ G+L+G  +V     A LPP W L +IT  +
Sbjct: 42  LIGGYLIGIAVVAFATRAGLPPEWRLFVITGFM 74
tr_hit_id A9NX64
Definition tr|A9NX64|A9NX64_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 49
Score (bit) 79.7
E-value 7.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947408|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M21, 5'
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NX64|A9NX64_PICSI Putative uncharacterized protein OS=Picea...    80   7e-14
tr|A9TGC1|A9TGC1_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|Q6H5B0|Q6H5B0_ORYSJ Os09g0380200 protein OS=Oryza sativa subs...    73   6e-12
tr|A3BYC5|A3BYC5_ORYSJ Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|A2Z0Q5|A2Z0Q5_ORYSI Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|A9SI00|A9SI00_PHYPA Predicted protein OS=Physcomitrella paten...    72   2e-11
tr|A7PGK1|A7PGK1_VITVI Chromosome chr17 scaffold_16, whole genom...    72   2e-11
tr|A5AD93|A5AD93_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A9S115|A9S115_PHYPA Predicted protein (Fragment) OS=Physcomit...    71   3e-11
tr|A9SGZ3|A9SGZ3_PHYPA Predicted protein OS=Physcomitrella paten...    70   4e-11
tr|B6TCK1|B6TCK1_MAIZE DnaJ domain containing protein OS=Zea may...    70   5e-11
tr|Q7EYD0|Q7EYD0_ORYSJ Putative uncharacterized protein P0477F03...    69   9e-11
tr|Q0J5P0|Q0J5P0_ORYSJ Os08g0416900 protein (Fragment) OS=Oryza ...    69   9e-11
tr|B4FT56|B4FT56_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|Q9FN50|Q9FN50_ARATH Emb|CAB62636.1 (Cell growth defect factor...    68   3e-10
tr|B7FG75|B7FG75_MEDTR Putative uncharacterized protein OS=Medic...    67   4e-10
tr|Q307Y4|Q307Y4_SOLTU Cell growth defect factor-like OS=Solanum...    65   1e-09
tr|A3BT56|A3BT56_ORYSJ Putative uncharacterized protein OS=Oryza...    65   1e-09
tr|A4SA03|A4SA03_OSTLU Predicted protein OS=Ostreococcus lucimar...    47   5e-04
tr|A7R0J6|A7R0J6_VITVI Chromosome undetermined scaffold_310, who...    46   8e-04
tr|B6TKC3|B6TKC3_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|Q9SD32|Q9SD32_ARATH Putative uncharacterized protein F24M12.1...    42   0.012
tr|Q94C78|Q94C78_ARATH Putative uncharacterized protein At3g5114...    42   0.012
tr|Q60D81|Q60D81_BRAOL Putative Expressed protein OS=Brassica ol...    40   0.045
tr|Q0DTD2|Q0DTD2_ORYSJ Os03g0255200 protein OS=Oryza sativa subs...    37   0.38 
tr|B8AKA7|B8AKA7_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|Q2JGX6|Q2JGX6_FRASC Poly(3-hydroxybutyrate) depolymerase-like...    34   3.2  
tr|B1H3P4|B1H3P4_SALSA Claudin 28b (Fragment) OS=Salmo salar PE=...    34   4.2  
tr|Q0RUG1|Q0RUG1_FRAAA Putative LpqP (Hydrolase/esterase) OS=Fra...    34   4.2  
tr|Q6DHP1|Q6DHP1_DANRE Zgc:92192 OS=Danio rerio GN=zgc:92192 PE=...    33   5.5  

>tr|A9NX64|A9NX64_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 279

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 31/49 (63%), Positives = 43/49 (87%)
 Frame = +1

Query: 31  FGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           FG L VGWL GS ++PV+P++LLP  W+LE++TALISY+F+++ACTFLK
Sbjct: 231 FGALAVGWLFGSLVIPVIPLSLLPVTWTLELVTALISYIFLFIACTFLK 279


>tr|A9TGC1|A9TGC1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222052 PE=4 SV=1
          Length = 262

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 30/58 (51%), Positives = 42/58 (72%)
 Frame = +1

Query: 4   ALKNRIICRFGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           +L    +   G LVVGW+ GS ++PV+P  L+P  WSLE+ TAL+SYVF+W +CTFL+
Sbjct: 205 SLGRAFVLGLGSLVVGWVFGSILIPVIPPLLIPRTWSLELSTALVSYVFLWFSCTFLR 262


>tr|Q6H5B0|Q6H5B0_ORYSJ Os09g0380200 protein OS=Oryza sativa subsp.
           japonica GN=P0027G10.33 PE=4 SV=1
          Length = 145

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 27/49 (55%), Positives = 43/49 (87%)
 Frame = +1

Query: 31  FGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           FG LV GW++GS +VP++P  ++PP+WSLE++T+L++YVF+++ CTFLK
Sbjct: 97  FGVLVGGWIIGSLLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 145


>tr|A3BYC5|A3BYC5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028047 PE=4 SV=1
          Length = 269

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 27/49 (55%), Positives = 43/49 (87%)
 Frame = +1

Query: 31  FGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           FG LV GW++GS +VP++P  ++PP+WSLE++T+L++YVF+++ CTFLK
Sbjct: 221 FGVLVGGWIIGSLLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 269


>tr|A2Z0Q5|A2Z0Q5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31181 PE=4 SV=1
          Length = 269

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 27/49 (55%), Positives = 43/49 (87%)
 Frame = +1

Query: 31  FGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           FG LV GW++GS +VP++P  ++PP+WSLE++T+L++YVF+++ CTFLK
Sbjct: 221 FGVLVGGWIIGSLLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 269


>tr|A9SI00|A9SI00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212552 PE=4 SV=1
          Length = 214

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 27/46 (58%), Positives = 40/46 (86%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           LV+GW++GS ++PV+P  +LP +WSLE+ TAL+SY+F+W +CTFLK
Sbjct: 169 LVLGWVLGSVLMPVIPKQILPKSWSLELSTALVSYIFLWFSCTFLK 214


>tr|A7PGK1|A7PGK1_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017588001
           PE=4 SV=1
          Length = 92

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = +1

Query: 4   ALKNRIICRFGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           +L    I   G LV GW+ GSF+VP++P  LL P W+LE++T+L++YVF+++ CTFLK
Sbjct: 35  SLARAFIIGLGSLVAGWVCGSFLVPMIPSFLLRPTWTLELLTSLVAYVFLFLGCTFLK 92


>tr|A5AD93|A5AD93_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017550 PE=4 SV=1
          Length = 235

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = +1

Query: 4   ALKNRIICRFGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           +L    I   G LV GW+ GSF+VP++P  LL P W+LE++T+L++YVF+++ CTFLK
Sbjct: 178 SLARAFIIGLGSLVAGWVCGSFLVPMIPSFLLRPTWTLELLTSLVAYVFLFLGCTFLK 235


>tr|A9S115|A9S115_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_122486 PE=4 SV=1
          Length = 197

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 26/49 (53%), Positives = 42/49 (85%)
 Frame = +1

Query: 31  FGGLVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           FG LV+GW+  SF+VPV+P  +LPP+W+LE+ ++L+SY+F++ ACT+L+
Sbjct: 149 FGALVLGWVFASFLVPVIPTKILPPSWTLELTSSLVSYIFLFGACTYLR 197


>tr|A9SGZ3|A9SGZ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129803 PE=4 SV=1
          Length = 203

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +1

Query: 40  LVVGWLVGSFIVPVVPMALLPPNWSLEIITALISYVFMWVACTFLK 177
           LVVGW+ GS ++PV+P  L+P  WSLE+ TAL+SYVF+W +CTFL+
Sbjct: 158 LVVGWVFGSVLIPVIPSQLIPRAWSLELSTALVSYVFLWFSCTFLR 203