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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947409
Clone id YMU02A01NGRL0015_M22
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TCTCCTCCTTGTGGAGTGGGAGCCCTTTGTCACCCCAGCAATGGAGTGGCGTGATGATGG
TATTTGGAGGGCTTTCAGTGCAAATTTACCTCAAGTGGCGGCGCAAGAACAAGCCAATGG
TTGAGAAACCAAGGAAAGATTGAAGTGTATTTTATAGACTCATTTAAAAGCATTCTTTGG
GCCATGTGCTCTTGCCATACTCGGGATCCTCAAATATATTGGATTCCTTGTGTGCTATTG
CCAGTAAAAGATCTGGCGAAAAGTTTTAGATGACAGAGTTCTGAAGAAGCTGGGGAAGAT
TTTGAGGCATTATTTTGTATTATGTAAGAAGCATATTCTTGTTACCTTCTTCCCTTGGAG
CATATTTGTAACTCTCCGAAAGGCAAACTGTGAGAATATACGAAAAATAGTTTTGTCGAA
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q54I86
Definition sp|Q54I86|S35B1_DICDI Solute carrier family 35 member B1 OS=Dictyostelium discoideum
Align length 43
Score (bit) 37.0
E-value 0.031
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947409|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M22, 5'
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54I86|S35B1_DICDI Solute carrier family 35 member B1 OS=Dict...    37   0.031
sp|Q5B5W2|HUT1_EMENI UDP-galactose transporter homolog 1 OS=Emer...    34   0.26 
sp|Q5ADN8|HUT1_CANAL UDP-galactose transporter homolog 1 OS=Cand...    33   0.34 
sp|Q4WJM7|HUT1_ASPFU UDP-galactose transporter homolog 1 OS=Aspe...    33   0.34 
sp|Q6C4X5|HUT1_YARLI UDP-galactose transporter homolog 1 OS=Yarr...    32   1.3  
sp|Q6BMV3|HUT1_DEBHA UDP-galactose transporter homolog 1 OS=Deba...    30   2.9  
sp|Q7PCJ6|RPOC2_CHLRE DNA-directed RNA polymerase subunit beta''...    30   3.8  
sp|Q06163|TERT_YEAST Telomerase reverse transcriptase OS=Sacchar...    29   6.4  
sp|Q83F67|SYP_COXBU Prolyl-tRNA synthetase OS=Coxiella burnetii ...    29   6.4  
sp|A9N9Z2|SYP_COXBR Prolyl-tRNA synthetase OS=Coxiella burnetii ...    29   6.4  
sp|A9KGU5|SYP_COXBN Prolyl-tRNA synthetase OS=Coxiella burnetii ...    29   6.4  
sp|A0T0G5|SECA_PHATR Protein translocase subunit secA OS=Phaeoda...    29   6.4  
sp|A1CEE0|IML1_ASPCL Vacuolar membrane-associated protein iml1 O...    29   8.4  

>sp|Q54I86|S35B1_DICDI Solute carrier family 35 member B1
           OS=Dictyostelium discoideum GN=slc35b1 PE=3 SV=1
          Length = 285

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEKP 131
           S  + G  L   QW+ + MVFGGL + +Y+ +  K K +V  P
Sbjct: 223 SIFYFGHSLDNLQWAAICMVFGGLILDLYISYSNKKKGVVLSP 265


>sp|Q5B5W2|HUT1_EMENI UDP-galactose transporter homolog 1
           OS=Emericella nidulans GN=hut1 PE=3 SV=1
          Length = 424

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEKPRK 137
           S  W G  LS  QW G+ +VFGG+  +  ++ R++ K    K +K
Sbjct: 379 SVFWFGHSLSAGQWLGIGLVFGGIGAEAVVQ-RQEKKAKAAKAKK 422


>sp|Q5ADN8|HUT1_CANAL UDP-galactose transporter homolog 1 OS=Candida
           albicans GN=HUT1 PE=3 SV=1
          Length = 370

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 12/32 (37%), Positives = 25/32 (78%)
 Frame = +3

Query: 18  GSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNK 113
           G  LS +QW GV +VFGG+ ++ ++K++++++
Sbjct: 329 GHHLSWEQWVGVGLVFGGIGLEAFIKFKQQSQ 360


>sp|Q4WJM7|HUT1_ASPFU UDP-galactose transporter homolog 1
           OS=Aspergillus fumigatus GN=hut1 PE=3 SV=1
          Length = 415

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRK 107
           S  W G  LS  QW G+ +VFGG+  +  ++ R K
Sbjct: 367 SVFWFGHTLSAGQWLGIGLVFGGIGAEAVVQKREK 401


>sp|Q6C4X5|HUT1_YARLI UDP-galactose transporter homolog 1
           OS=Yarrowia lipolytica GN=HUT1 PE=3 SV=1
          Length = 365

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRR 104
           S +W    L+  QW+GV  VFGG+  + ++K ++
Sbjct: 331 SVVWFNHRLTLGQWAGVAAVFGGIGFEAWMKMKK 364


>sp|Q6BMV3|HUT1_DEBHA UDP-galactose transporter homolog 1
           OS=Debaryomyces hansenii GN=HUT1 PE=3 SV=2
          Length = 354

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 18  GSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEK 128
           G  L+  QW GV +VFGG+  +  +K      P  +K
Sbjct: 316 GHQLNGLQWGGVGLVFGGIGYEALVKMSMNKAPTTKK 352


>sp|Q7PCJ6|RPOC2_CHLRE DNA-directed RNA polymerase subunit beta''
            OS=Chlamydomonas reinhardtii GN=rpoC2 PE=3 SV=1
          Length = 3120

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -3

Query: 323  IIQNNASKSSPASSELCHLKLFARSFTGNSTQGIQYI*GSRVWQEHMAQRMLLNESIKYT 144
            + QNN  KS+  +  L   +L  R+   N+T+ IQ    S+V++  +  ++L N     T
Sbjct: 2943 VTQNNKRKSTRKNVSLADRELKTRNTLSNTTKPIQI---SQVFEHKVLNQLLSNNLDGPT 2999

Query: 143  SIFP 132
             +FP
Sbjct: 3000 GLFP 3003


>sp|Q06163|TERT_YEAST Telomerase reverse transcriptase
           OS=Saccharomyces cerevisiae GN=EST2 PE=1 SV=1
          Length = 884

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 121 LRNQGKIEVYFIDSFKSILWAMCSCHTRDPQIYWIPCVLLPVKDL 255
           L NQ  I V  ++ FK+ LW    C+ R+  ++    +  P+ DL
Sbjct: 599 LSNQDVINVVEMEIFKTALWVEDKCYIREDGLFQGSSLSAPIVDL 643


>sp|Q83F67|SYP_COXBU Prolyl-tRNA synthetase OS=Coxiella burnetii
           GN=proS PE=3 SV=1
          Length = 566

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  PFVTPAMEWRDDGIWRAFSANLPQVAAQEQ 112
           P V PA  W++ G W A+ A L ++  + Q
Sbjct: 74  PIVQPASLWQESGRWEAYGAELLRIMDRHQ 103


>sp|A9N9Z2|SYP_COXBR Prolyl-tRNA synthetase OS=Coxiella burnetii
           (strain RSA 331 / Henzerling II) GN=proS PE=3 SV=1
          Length = 564

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  PFVTPAMEWRDDGIWRAFSANLPQVAAQEQ 112
           P V PA  W++ G W A+ A L ++  + Q
Sbjct: 72  PIVQPASLWQESGRWEAYGAELLRIMDRHQ 101
tr_hit_id A9RV93
Definition tr|A9RV93|A9RV93_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947409|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M22, 5'
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RV93|A9RV93_PHYPA Predicted protein OS=Physcomitrella paten...    58   3e-07
tr|A7QEH8|A7QEH8_VITVI Chromosome chr1 scaffold_84, whole genome...    55   2e-06
tr|Q9M9S6|Q9M9S6_ARATH F14L17.13 protein (Putative uncharacteriz...    54   4e-06
tr|Q9FV57|Q9FV57_ARATH Putative UDP-galactose transporter MSS4 (...    54   4e-06
tr|Q0KIT5|Q0KIT5_SOLDE Adenosine 3'-phospho 5'-phosphosulfate tr...    54   4e-06
tr|Q8L9F0|Q8L9F0_ARATH Putative uncharacterized protein OS=Arabi...    54   5e-06
tr|B6TKZ4|B6TKZ4_MAIZE Solute carrier family 35 member B1 OS=Zea...    54   5e-06
tr|B4FKQ7|B4FKQ7_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|Q6L4J7|Q6L4J7_SOLDE Putative UDP-galactose transporter OS=Sol...    53   7e-06
tr|A3BD79|A3BD79_ORYSJ Putative uncharacterized protein OS=Oryza...    53   7e-06
tr|Q69XD4|Q69XD4_ORYSJ Os06g0593100 protein OS=Oryza sativa subs...    53   9e-06
tr|B8B472|B8B472_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|A9U1U5|A9U1U5_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|Q8LB39|Q8LB39_ARATH Putative uncharacterized protein OS=Arabi...    52   2e-05
tr|Q8L885|Q8L885_ARATH UDP-galactose/UDP-glucose transporter OS=...    52   2e-05
tr|O64503|O64503_ARATH Expressed protein (At2g02810) (Putative u...    52   2e-05
tr|A9NRK5|A9NRK5_PICSI Putative uncharacterized protein OS=Picea...    51   3e-05
tr|Q2HTW1|Q2HTW1_MEDTR UDP-galactose transporter homolog 1, rela...    51   3e-05
tr|A9SAT0|A9SAT0_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A8HQM1|A8HQM1_CHLRE UDP galactose transporter OS=Chlamydomona...    41   0.034
tr|A6RBE2|A6RBE2_AJECN Predicted protein OS=Ajellomyces capsulat...    40   0.044
tr|B6K633|B6K633_SCHJP Uridine diphosphate-N-acetylglucosamine t...    37   0.38 
tr|A9SE33|A9SE33_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|Q1E0I6|Q1E0I6_COCIM Putative uncharacterized protein OS=Cocci...    37   0.49 
tr|A7NZ73|A7NZ73_VITVI Chromosome chr6 scaffold_3, whole genome ...    35   1.9  
tr|B8M5Y4|B8M5Y4_9EURO UDP-Glc/Gal endoplasmic reticulum nucleot...    35   2.4  
tr|B6Q6J7|B6Q6J7_PENMA UDP-Glc/Gal endoplasmic reticulum nucleot...    34   3.2  
tr|A5E084|A5E084_LODEL Putative uncharacterized protein OS=Lodde...    34   3.2  
tr|Q0P7B4|Q0P7B4_SACMI EST2 protein OS=Saccharomyces mikatae GN=...    34   4.1  
tr|Q0P7B3|Q0P7B3_SACMI EST2 protein OS=Saccharomyces mikatae GN=...    34   4.1  

>tr|A9RV93|A9RV93_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119825 PE=4 SV=1
          Length = 336

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKN---KPMVEKPRK 137
           SS+W+G+ LS QQW+GV+MVF GL  QIYLKWR+++   K +VE  +K
Sbjct: 287 SSIWNGNHLSLQQWAGVIMVFTGLMYQIYLKWRKRSAHKKTVVESEKK 334


>tr|A7QEH8|A7QEH8_VITVI Chromosome chr1 scaffold_84, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037017001
           PE=4 SV=1
          Length = 214

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 28/45 (62%), Positives = 31/45 (68%), Gaps = 6/45 (13%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRR------KNKPM 119
           SSL SG+PLS +QW  V MVF GLS QIYLKW+R      K KPM
Sbjct: 170 SSLLSGNPLSAKQWGSVSMVFSGLSYQIYLKWKRGQRLHKKRKPM 214


>tr|Q9M9S6|Q9M9S6_ARATH F14L17.13 protein (Putative uncharacterized
           protein At1g14360) (Putative uncharacterized protein
           At1g14360; F14L17.13) OS=Arabidopsis thaliana
           GN=At1g14360/F14L17.13 PE=2 SV=1
          Length = 331

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEK 128
           SS+ SG+PLS +QW  V MVFGGLS QIYLKWR+  +   +K
Sbjct: 288 SSVLSGNPLSSKQWGCVSMVFGGLSYQIYLKWRKLQRMQKKK 329


>tr|Q9FV57|Q9FV57_ARATH Putative UDP-galactose transporter MSS4
           (Fragment) OS=Arabidopsis thaliana GN=F14L17.13 PE=2
           SV=1
          Length = 191

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEK 128
           SS+ SG+PLS +QW  V MVFGGLS QIYLKWR+  +   +K
Sbjct: 148 SSVLSGNPLSSKQWGCVSMVFGGLSYQIYLKWRKLQRMQKKK 189


>tr|Q0KIT5|Q0KIT5_SOLDE Adenosine 3'-phospho 5'-phosphosulfate
           transporter 1 , related OS=Solanum demissum
           GN=SDM1_26t00009 PE=4 SV=1
          Length = 305

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 6/47 (12%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWR------RKNKPMVE 125
           SS+ SG+PLS +QW+ V MVF GLS QIYLKWR      +K KPM +
Sbjct: 166 SSVLSGNPLSEKQWTSVGMVFSGLSYQIYLKWRKLQRMTKKRKPMYQ 212


>tr|Q8L9F0|Q8L9F0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 329

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNKPMVEKPRK 137
           SS+ SG+PLS +QW  V MVFGGLS QIYLKWR+    +++K +K
Sbjct: 288 SSVLSGNPLSSKQWGCVSMVFGGLSYQIYLKWRK----LLQKKKK 328


>tr|B6TKZ4|B6TKZ4_MAIZE Solute carrier family 35 member B1 OS=Zea
           mays PE=2 SV=1
          Length = 361

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRK 107
           SS+ SG+PLS +QW  V+MVF GLS+QIYLKW+RK
Sbjct: 320 SSVISGNPLSLKQWGSVVMVFLGLSIQIYLKWKRK 354


>tr|B4FKQ7|B4FKQ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 361

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRK 107
           SS+ SG+PLS +QW  V+MVF GLS+QIYLKW+RK
Sbjct: 320 SSVISGNPLSLKQWGSVVMVFLGLSIQIYLKWKRK 354


>tr|Q6L4J7|Q6L4J7_SOLDE Putative UDP-galactose transporter
           OS=Solanum demissum GN=PGEC219.2 PE=4 SV=1
          Length = 350

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 6/46 (13%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWR------RKNKPMV 122
           SS+ SG+PLS +QW+ V MVF GLS QIYLKWR      +K KP++
Sbjct: 288 SSVLSGNPLSEKQWTSVGMVFSGLSYQIYLKWRKLQRMTKKRKPII 333


>tr|A3BD79|A3BD79_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021001 PE=4 SV=1
          Length = 334

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = +3

Query: 3   SSLWSGSPLSPQQWSGVMMVFGGLSVQIYLKWRRKNK 113
           SS+ SG+PLS +QW  V+MVF GLS+QI+LKW+RK +
Sbjct: 292 SSVISGNPLSLKQWGSVVMVFSGLSLQIFLKWKRKKE 328