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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947430
Clone id YMU02A01NGRL0015_O04
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_O04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACATTCTGAAGGACACTCTCTCCAGCAGCCATGGAGGTTGGAAGTGTGGCATCGGCTAT
GGCTCTACGATTTACCAAACCCTCAGCTGGACCTCGGCTACCCCTGCCATGCGTCAAGTC
TCTTCGTCATCTGCCTCCCTCATCATCATCATCACGCTCTCGAGCTGTCGTGAGAGCTTC
TGAGAAGCCACAACGCACAGCATATGAGGAAGACGAATACATGGAGACTCTTACAGAACT
CTCCAGTGAAATCGAGGTATCAAAGGCTTCCTTGCTTACCCCTGAGCACAAAGCTTTGCT
CGCTCTGTTGCTTTCACTAGGGTTCACACTTGGGTCTGCAGAGGTGGCCATGGCTTTGGG
TCCTGAGGGCCCTCTTGTAGAAGAATTTTGGGACAACATGAGGAGGTATGGCCTCTACTT
CTTGACAGTTTTCACAGGAGGTCTTTACAGTCTTGTGGAGCCCATTTTTTCTCTTCTTCG
CAATCCAGTAACGGCCATTTTCACGATTGCTTTCCTTTTTGGCTTCTTGTATCTCCTCTA
CTTAGTTCTGAACACCATGCTGGGCATCACCGCCTTCAATTATGATTATG
■■Homology search results ■■ -
sp_hit_id Q1XDF7
Definition sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra yezoensis
Align length 44
Score (bit) 39.7
E-value 0.011
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947430|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O04, 5'
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra ...    40   0.011
sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra ...    35   0.21 
sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardi...    35   0.28 
sp|P04412|EGFR_DROME Epidermal growth factor receptor OS=Drosoph...    31   5.3  
sp|Q88IU7|LPXH_PSEPK UDP-2,3-diacylglucosamine hydrolase OS=Pseu...    30   6.9  
sp|A5W461|LPXH_PSEP1 UDP-2,3-diacylglucosamine hydrolase OS=Pseu...    30   6.9  
sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos tauru...    30   6.9  

>sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra
           yezoensis GN=ycf33 PE=3 SV=1
          Length = 67

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +2

Query: 377 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 508
           + +FWDN+ R+  + ++V  G +  ++ P F LL+ P+T+ F I
Sbjct: 1   MNKFWDNVLRFPRFLVSVILGLILIIISPFFVLLKKPLTSFFFI 44


>sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra
           purpurea GN=ycf33 PE=3 SV=1
          Length = 67

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 377 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 508
           +  FW+N+ ++  + ++V  G + +++ P F L R P T+ F I
Sbjct: 1   MSRFWNNVVKFPRFLVSVILGLILTIISPFFVLFRKPSTSFFFI 44


>sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardia
           theta GN=ycf33 PE=3 SV=1
          Length = 65

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 386 FWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAI 499
           FW+N+ RY  +F++   G ++ +  P+F+LL  P +A+
Sbjct: 4   FWENLIRYPRFFISSTLGLVFIITGPLFNLLNKPKSAL 41


>sp|P04412|EGFR_DROME Epidermal growth factor receptor OS=Drosophila
           melanogaster GN=Egfr PE=1 SV=3
          Length = 1426

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 55  RCHTSNLHGCWRECPSEC 2
           +CH S  HGCW E P  C
Sbjct: 260 KCHESCTHGCWGEGPKNC 277


>sp|Q88IU7|LPXH_PSEPK UDP-2,3-diacylglucosamine hydrolase
           OS=Pseudomonas putida (strain KT2440) GN=lpxH PE=3 SV=1
          Length = 240

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 499 NGRYWIAKKRKNGLHKTVKTSCENCQEVEAIPPHVVPKFFYKRALRTQSHGHLCRP 332
           + RY +A+K ++     V+       E+  + P  VPK      +RT  HGH  RP
Sbjct: 146 SARYKLARKLRSESRTQVRMKST---EIVDVTPEEVPKVMAAHGVRTLVHGHTHRP 198


>sp|A5W461|LPXH_PSEP1 UDP-2,3-diacylglucosamine hydrolase
           OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lpxH
           PE=3 SV=1
          Length = 240

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 499 NGRYWIAKKRKNGLHKTVKTSCENCQEVEAIPPHVVPKFFYKRALRTQSHGHLCRP 332
           + RY +A+K ++     V+       E+  + P  VPK      +RT  HGH  RP
Sbjct: 146 SARYKLARKLRSESRTQVRMKST---EIVDVTPEEVPKVMAAHGVRTLVHGHTHRP 198


>sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos taurus
           GN=INTS12 PE=2 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 387 NSSTRGPSGPKAMATSADPSVNPSES 310
           NS T GPSG     T+++PS +PS S
Sbjct: 406 NSGTSGPSGSTTNKTASEPSTSPSAS 431
tr_hit_id A9P095
Definition tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 86
Score (bit) 95.9
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947430|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O04, 5'
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea...    96   2e-18
tr|Q9SUL0|Q9SUL0_ARATH Putative uncharacterized protein AT4g1641...    95   3e-18
tr|Q8VZK4|Q8VZK4_ARATH Putative uncharacterized protein At4g1641...    95   3e-18
tr|Q8LCS9|Q8LCS9_ARATH Putative uncharacterized protein OS=Arabi...    95   3e-18
tr|A7R2A4|A7R2A4_VITVI Chromosome undetermined scaffold_410, who...    95   3e-18
tr|A5ADD6|A5ADD6_VITVI Putative uncharacterized protein OS=Vitis...    95   3e-18
tr|Q69J35|Q69J35_ORYSJ Os07g0607200 protein OS=Oryza sativa subs...    90   8e-17
tr|A2YNJ6|A2YNJ6_ORYSI Putative uncharacterized protein OS=Oryza...    90   8e-17
tr|B6T2K7|B6T2K7_MAIZE Putative uncharacterized protein OS=Zea m...    90   1e-16
tr|B6U1R4|B6U1R4_MAIZE Putative uncharacterized protein OS=Zea m...    89   2e-16
tr|Q8DIU8|Q8DIU8_THEEB Ycf33 protein OS=Thermosynechococcus elon...    49   2e-04
tr|B8HWS0|B8HWS0_9CHRO Putative uncharacterized protein OS=Cyano...    48   5e-04
tr|A0ZC10|A0ZC10_NODSP Putative uncharacterized protein OS=Nodul...    47   8e-04
tr|A8J6Q3|A8J6Q3_CHLRE Predicted protein OS=Chlamydomonas reinha...    45   0.004
tr|Q3M9Q9|Q3M9Q9_ANAVT Putative uncharacterized protein OS=Anaba...    44   0.009
tr|B4WMR3|B4WMR3_9SYNE Putative uncharacterized protein OS=Synec...    44   0.009
tr|Q8Z0M9|Q8Z0M9_ANASP Asr0062 protein OS=Anabaena sp. (strain P...    43   0.012
tr|A8G2B7|A8G2B7_PROM2 Putative uncharacterized protein ycf33 OS...    43   0.012
tr|B7KDK0|B7KDK0_9CHRO Putative uncharacterized protein OS=Cyano...    43   0.012
tr|Q7V3G4|Q7V3G4_PROMP Putative uncharacterized protein OS=Proch...    42   0.034
tr|A2BNQ6|A2BNQ6_PROMS Putative uncharacterized protein OS=Proch...    42   0.034
tr|Q31D69|Q31D69_PROM9 Putative uncharacterized protein OS=Proch...    41   0.044
tr|Q10XT4|Q10XT4_TRIEI Putative uncharacterized protein OS=Trich...    41   0.044
tr|A3PAH6|A3PAH6_PROM0 Putative uncharacterized protein OS=Proch...    41   0.044
tr|Q93LL6|Q93LL6_NOSP7 Putative uncharacterized protein OS=Nosto...    41   0.058
tr|Q7VE82|Q7VE82_PROMA Uncharacterized membrane protein OS=Proch...    39   0.29 
tr|A5KBB5|A5KBB5_PLAVI Putative uncharacterized protein OS=Plasm...    39   0.29 
tr|Q2JPQ8|Q2JPQ8_SYNJB Putative uncharacterized protein OS=Synec...    38   0.37 
tr|A2BU73|A2BU73_PROM5 Putative uncharacterized protein OS=Proch...    38   0.49 
tr|Q2JTT4|Q2JTT4_SYNJA Putative uncharacterized protein OS=Synec...    37   0.64 

>tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 225

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 42/86 (48%), Positives = 58/86 (67%)
 Frame = +2

Query: 332 GSAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIA 511
           GS + A+A  PEGPLVEEFW+NMRRYGLYF TV TG +Y++++PI+ LL+NP++A+  I 
Sbjct: 138 GSEQSALAFWPEGPLVEEFWENMRRYGLYFFTVGTGAVYTILKPIYELLKNPISAVLVIV 197

Query: 512 XXXXXXXXXXXXXNTMLGITAFNYDY 589
                          M+GI+ F+Y Y
Sbjct: 198 IISGIFYLLYLTLTAMIGISEFSYQY 223


>tr|Q9SUL0|Q9SUL0_ARATH Putative uncharacterized protein AT4g16410
           OS=Arabidopsis thaliana GN=dl4233c PE=4 SV=1
          Length = 183

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +2

Query: 338 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXX 517
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +   
Sbjct: 98  AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 157

Query: 518 XXXXXXXXXXXNTMLGITAFNYDY 589
                      + M+G+  F Y Y
Sbjct: 158 GGSFYIVSQVVSAMIGVNEFAYQY 181


>tr|Q8VZK4|Q8VZK4_ARATH Putative uncharacterized protein At4g16410
           OS=Arabidopsis thaliana GN=At4g16410 PE=2 SV=1
          Length = 185

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +2

Query: 338 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXX 517
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +   
Sbjct: 100 AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 159

Query: 518 XXXXXXXXXXXNTMLGITAFNYDY 589
                      + M+G+  F Y Y
Sbjct: 160 GGSFYIVSQVVSAMIGVNEFAYQY 183


>tr|Q8LCS9|Q8LCS9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 185

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +2

Query: 338 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXX 517
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +   
Sbjct: 100 AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 159

Query: 518 XXXXXXXXXXXNTMLGITAFNYDY 589
                      + M+G+  F Y Y
Sbjct: 160 GGSFYIVSQVVSAMIGVNEFAYQY 183


>tr|A7R2A4|A7R2A4_VITVI Chromosome undetermined scaffold_410, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012886001 PE=4 SV=1
          Length = 190

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 42/81 (51%), Positives = 56/81 (69%)
 Frame = +2

Query: 347 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXXXXX 526
           A+ALGPEGPL+EEFWDN+RRY LYFLTV TG +Y++  PI  LL+NP++AI  +      
Sbjct: 108 ALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGS 167

Query: 527 XXXXXXXXNTMLGITAFNYDY 589
                   + M+G+T F+YDY
Sbjct: 168 LYIVSQVISAMVGVTEFSYDY 188


>tr|A5ADD6|A5ADD6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023242 PE=4 SV=1
          Length = 266

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 42/81 (51%), Positives = 56/81 (69%)
 Frame = +2

Query: 347 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXXXXX 526
           A+ALGPEGPL+EEFWDN+RRY LYFLTV TG +Y++  PI  LL+NP++AI  +      
Sbjct: 184 ALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGS 243

Query: 527 XXXXXXXXNTMLGITAFNYDY 589
                   + M+G+T F+YDY
Sbjct: 244 LYIVSQVISAMVGVTEFSYDY 264


>tr|Q69J35|Q69J35_ORYSJ Os07g0607200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0072I06.21 PE=2 SV=1
          Length = 196

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 45/85 (52%), Positives = 54/85 (63%)
 Frame = +2

Query: 335 SAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAX 514
           +A  A ALGPEGPLVEEFWDNMRRY LY +TV TG  Y+L +PI  LL+NPVTA+  +A 
Sbjct: 110 AAGPAAALGPEGPLVEEFWDNMRRYALYVVTVSTGFAYTLAQPIVELLKNPVTALLIVAV 169

Query: 515 XXXXXXXXXXXXNTMLGITAFNYDY 589
                       N M+G + F Y Y
Sbjct: 170 LAGGGFLVSQVLNAMVGNSDFIYTY 194


>tr|A2YNJ6|A2YNJ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26809 PE=4 SV=1
          Length = 196

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 45/85 (52%), Positives = 54/85 (63%)
 Frame = +2

Query: 335 SAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAX 514
           +A  A ALGPEGPLVEEFWDNMRRY LY +TV TG  Y+L +PI  LL+NPVTA+  +A 
Sbjct: 110 AAGPAAALGPEGPLVEEFWDNMRRYALYVVTVSTGFAYTLAQPIVELLKNPVTALLIVAV 169

Query: 515 XXXXXXXXXXXXNTMLGITAFNYDY 589
                       N M+G + F Y Y
Sbjct: 170 LAGGGFLVSQVLNAMVGNSDFIYTY 194


>tr|B6T2K7|B6T2K7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 192

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 43/81 (53%), Positives = 54/81 (66%)
 Frame = +2

Query: 347 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXXXXX 526
           A+ALGPEGPLVEEFWDNMRRY LY +TV TG  Y++++PI  LL+NPVTA+  +A     
Sbjct: 111 ALALGPEGPLVEEFWDNMRRYALYVVTVSTGVAYTVLQPIVELLKNPVTALLIVAVIAGS 170

Query: 527 XXXXXXXXNTMLGITAFNYDY 589
                   N M+G + F Y Y
Sbjct: 171 GFLVSQVLNAMVGNSDFIYRY 191


>tr|B6U1R4|B6U1R4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 196

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +2

Query: 347 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAXXXXX 526
           A+ALGPEGPLVEEFWDNMRRY LY +TV TG  Y++++PI  LL+NP+TA+  +A     
Sbjct: 115 ALALGPEGPLVEEFWDNMRRYALYVVTVSTGVAYTVLQPIVELLKNPITALLIVAVLAGS 174

Query: 527 XXXXXXXXNTMLGITAFNYDY 589
                   N M+G + F Y Y
Sbjct: 175 GFLVSQVLNAMVGNSDFIYMY 195