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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947431
Clone id YMU02A01NGRL0015_O06
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_O06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCC
TTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATG
CCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCA
GCCACTTTGCATACATAATGAAACAACTTCCCAGTGGTGGCTTCGAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26985
Definition sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii
Align length 24
Score (bit) 37.7
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947431|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O06, 5'
         (225 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    38   0.018
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    38   0.018
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    37   0.030
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    37   0.039
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    36   0.051
sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha...    36   0.067
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    35   0.088
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    35   0.11 
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    35   0.11 
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|Q9XGX4|RBS3_AMAHP Ribulose bisphosphate carboxylase small cha...    35   0.15 
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...    35   0.15 
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    34   0.20 
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai...    34   0.25 
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...    34   0.25 

>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 138 AYIRLVCFDANRQVQISGFLVHRP 161


>sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small chain
           6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6
           PE=3 SV=1
          Length = 182

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 145 AYIRLVCFDANRQVQISGFLVHRP 168


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
           PE=2 SV=1
          Length = 184

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 AYIRLVCFDANRQVQISGFLVHRP 170


>sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5
           PE=2 SV=1
          Length = 183

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 AYIRLVCFDANRQVQISGFLVHRP 169


>sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small chain
           4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4
           PE=2 SV=1
          Length = 182

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 145 AYIRLVCFDANRQVQISGFLVHRP 168


>sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small chain
           4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4
           PE=2 SV=1
          Length = 182

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 145 AYIRLVCFDANRQVQISGFLVHRP 168


>sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3
           PE=2 SV=1
          Length = 183

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 AYIRLVCFDANRQVQISGFLVHRP 169


>sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3
           PE=2 SV=1
          Length = 182

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 145 AYIRLVCFDANRQVQISGFLVHRP 168


>sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small chain
           2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3
           SV=1
          Length = 86

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 49  AYIRLVCFDANRQVQISGFLVHRP 72


>sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small chain
           2, chloroplastic (Fragment) OS=Acetabularia acetabulum
           GN=RBCS-2 PE=2 SV=1
          Length = 173

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKP 74
           A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 136 AYIRLVCFDANRQVQISGFLVHRP 159
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 25
Score (bit) 49.3
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947431|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O06, 5'
         (225 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.13 
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.13 
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.13 
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|Q33BU5|Q33BU5_CHLPY Ribulose bisphosphate carboxylase small c...    38   0.29 
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    37   0.38 
tr|B3TFH0|B3TFH0_9EUKA Chloroplast ribulose-1,5-bisphosphate car...    37   0.38 
tr|B3TFG9|B3TFG9_9EUKA Chloroplast ribulose-1,5-bisphosphate car...    37   0.38 
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.65 
tr|Q7XYK6|Q7XYK6_BIGNA Ribulose-1,5-bisphosphate carboxylase/oxy...    37   0.65 
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|A3F6J6|A3F6J6_CUCSA Ribulose bisphosphate carboxylase small c...    37   0.65 
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    36   0.84 
tr|Q8S322|Q8S322_ACEAT Ribulose bisphosphate carboxylase small c...    36   0.84 
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...    36   0.84 

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
          chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +3

Query: 3  AFIRVLGFDAKRQVQVSGFLVQKPS 77
          AFIRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 18 AFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKPS 77
           AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 149 AFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
          chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +3

Query: 3  AFIRVLGFDAKRQVQVSGFLVQKP 74
          AFIRVLGFDAKRQVQV+GFLV+KP
Sbjct: 11 AFIRVLGFDAKRQVQVAGFLVKKP 34


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 191 WVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 160 WVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 161 WVRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 161 WVRVLGFDSKKQVQICGFLVARPN 184


>tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small
           chain OS=Nannochloris bacillaris GN=NbrbcS2 PE=3 SV=1
          Length = 180

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +3

Query: 3   AFIRVLGFDAKRQVQVSGFLVQKPS 77
           A+IR++ FDA RQVQV+GFLV +P+
Sbjct: 143 AYIRLVAFDASRQVQVAGFLVHRPA 167


>tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_226715 PE=3 SV=1
          Length = 91

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 68  WVRVLGFDSKKQVQICGFLVARPN 91


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 6   FIRVLGFDAKRQVQVSGFLVQKPS 77
           ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 156 WVRVLGFDSKKQVQICGFLVARPN 179