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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947445
Clone id YMU02A01NGRL0015_O21
Library
Length 232
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_O21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTT
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGGCGGGGCGAGCGGTCCGCCTCTTTTGGT
GTGCACTGGTCGCTCCGTCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAATTGGCTGGGA
CGCGGATTCGGCGATGTTACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P07645
Definition sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain Rice)
Align length 35
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947445|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O21, 5'
         (203 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ...    32   0.76 
sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Ra...    32   1.3  
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ...    32   1.3  
sp|P52746|ZN142_HUMAN Zinc finger protein 142 OS=Homo sapiens GN...    31   1.7  
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech...    31   1.7  
sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo s...    31   2.2  
sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=...    31   2.2  
sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7 OS=Cryptoco...    31   2.2  
sp|P0A3I5|CYAC_BORPE Cyclolysin-activating lysine-acyltransferas...    31   2.2  
sp|P0A3I7|CYAC_BORPA Cyclolysin-activating lysine-acyltransferas...    31   2.2  
sp|P0A3I6|CYAC_BORBR Cyclolysin-activating lysine-acyltransferas...    31   2.2  
sp|Q8C1B1|CA1L1_MOUSE Calmodulin-regulated spectrin-associated p...    30   2.9  
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ...    30   4.9  
sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex prote...    30   4.9  
sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 OS=Hom...    29   6.4  
sp|Q2QYF3|SCR2_ORYSJ Protein SCARECROW 2 OS=Oryza sativa subsp. ...    29   6.4  
sp|A2ZHL0|SCR2_ORYSI Protein SCARECROW 2 OS=Oryza sativa subsp. ...    29   6.4  
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    29   8.4  

>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
           Rice) PE=3 SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRP 90
           SP PRP   RP  RPR K      TP   DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Rattus
            norvegicus GN=Rgnef PE=1 SV=1
          Length = 1700

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 129  PVHTKRGGPLAPPPRSNY------ELFNCNNLNIRYWSWNYRGCWHQTC 1
            P H+ RGGPL    +S Y      EL N + L  ++     R  WH+TC
Sbjct: 1409 PSHSFRGGPLQDQEKSRYLEKHREELANIHKLQYQFQQEQRR--WHRTC 1455


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
           member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
          Length = 994

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 203 KVTSPNPR-PSQLRPGARPRQKGRSDQCTPKEADRSPR 93
           + TSP PR P    P A+    G  D C+PK  + SPR
Sbjct: 880 ETTSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|P52746|ZN142_HUMAN Zinc finger protein 142 OS=Homo sapiens
            GN=ZNF142 PE=1 SV=3
          Length = 1687

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 177  QPIKARSASPTERTERPVHTKRGGPLAPPPRS 82
            +P +    SP E TE P+H  R G L P P S
Sbjct: 1311 EPAQPAPGSPAETTEGPLHCSRCGLLCPSPAS 1342


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
          Length = 1104

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPR 93
           K T+P PRP+  RP  RP   G   + TP +    P+
Sbjct: 186 KPTAPTPRPTPARPTPRPAGAGSPARPTPGQGQPKPQ 222


>sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo
           sapiens GN=SAC3D1 PE=1 SV=1
          Length = 403

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDP 81
           S  PRP+   P   P  +     C P++A+R P PR P
Sbjct: 10  SAPPRPAAPHP---PASRAFPQHCRPRDAERPPSPRSP 44


>sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=Mus
            musculus GN=Rgnef PE=1 SV=1
          Length = 1693

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 129  PVHTKRGGPLAPPPRSNY------ELFNCNNLNIRYWSWNYRGCWHQTC 1
            P H+ RGGPL    +S Y      EL N + L  ++     R  WH+TC
Sbjct: 1409 PSHSFRGGPLQDQEKSRYLEKQREELANIHKLQHQFQQEQRR--WHRTC 1455


>sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7
           OS=Cryptococcus neoformans GN=DBP7 PE=3 SV=1
          Length = 948

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 201 SNIAESASQP----IKARSASPTERTERPVHTKRGGPLAPPP 88
           SN+ +SAS P    IK R++ PT   ERP    + GP  P P
Sbjct: 116 SNVPKSASIPAPATIKHRTSLPTNAFERPPLPPQAGPSRPHP 157


>sp|P0A3I5|CYAC_BORPE Cyclolysin-activating lysine-acyltransferase
           cyaC OS=Bordetella pertussis GN=cyaC PE=1 SV=1
          Length = 185

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 153 SPTERTERPVHTKRGGPLAPPPRSNYELFNCNNLNIRYWSW 31
           SP  R + PVH      LAP     Y L  CN++ + Y SW
Sbjct: 30  SPMHR-DWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSW 69


>sp|P0A3I7|CYAC_BORPA Cyclolysin-activating lysine-acyltransferase
           cyaC OS=Bordetella parapertussis GN=cyaC PE=3 SV=1
          Length = 185

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 153 SPTERTERPVHTKRGGPLAPPPRSNYELFNCNNLNIRYWSW 31
           SP  R + PVH      LAP     Y L  CN++ + Y SW
Sbjct: 30  SPMHR-DWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSW 69
tr_hit_id A8JJG4
Definition tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 24
Score (bit) 66.2
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947445|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O21, 5'
         (203 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    66   8e-10
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    38   0.29 
tr|Q2HGM2|Q2HGM2_CHAGB Putative uncharacterized protein OS=Chaet...    37   0.37 
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob...    35   1.4  
tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein OS=Jant...    33   5.4  
tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein OS=Mycob...    33   7.1  
tr|Q99773|Q99773_HUMAN Putative uncharacterized protein OS=Homo ...    33   7.1  
tr|Q5KGR2|Q5KGR2_CRYNE Putative uncharacterized protein OS=Crypt...    33   7.1  
tr|Q98MZ5|Q98MZ5_RHILO Mlr0376 protein OS=Rhizobium loti GN=mlr0...    33   9.2  
tr|Q1QLF5|Q1QLF5_NITHX Putative uncharacterized protein OS=Nitro...    33   9.2  
tr|B8AC21|B8AC21_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|A8I9W6|A8I9W6_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   9.2  
tr|B7Q804|B7Q804_IXOSC Putative uncharacterized protein OS=Ixode...    33   9.2  
tr|Q55SB5|Q55SB5_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.2  

>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
          Length = 87

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 72  LFNCNNLNIRYWSWNYRGCWHQTC 1
           LFNCNNLNIRYWSWNYRGCWHQTC
Sbjct: 58  LFNCNNLNIRYWSWNYRGCWHQTC 81


>tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g225826 PE=4 SV=1
          Length = 135

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 36  SWNYRGCWHQTC 1
           SWNYRGCWHQTC
Sbjct: 118 SWNYRGCWHQTC 129


>tr|Q2HGM2|Q2HGM2_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_00632 PE=3 SV=1
          Length = 538

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 189 ESASQPIKARSASPTERTERPVHTKRGGPLAPPPRSNYELFNCNN 55
           +S+S P  A +   T+++E    T+   PLAPPPR N +  N N+
Sbjct: 24  KSSSPPFTASTRDDTQKSEETTSTEISKPLAPPPRPNQQQQNSNS 68


>tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein
           OS=Mycobacterium paratuberculosis GN=MAP_0822c PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 177 QPIKARSASPTERTERPVHTKRGGPLAP 94
           +P K  +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPAAEPAEPEEKPVHTRRGKPVIP 239


>tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein
           OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_1804 PE=4 SV=1
          Length = 483

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDPT 78
           ++T P+  P  ++PGARP   G + Q  P+    +PRPR  T
Sbjct: 354 QMTRPHFSPGDMQPGARP--PGNAGQHRPERQQGNPRPRSET 393


>tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122937 PE=4 SV=1
          Length = 291

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDPTTSF 69
           KV +P PR +QLR   R R++G     T   ADR P P+    +F
Sbjct: 247 KVNAPAPRGAQLRGPGRIRREGPGRAVTRLAADRKPGPKIQLRAF 291


>tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein
           OS=Mycobacterium avium (strain 104) GN=MAV_1010 PE=4
           SV=1
          Length = 259

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 189 ESASQPI-KARSASPTERTERPVHTKRGGPLAP 94
           E A  P  +A +A P E  E+PVHT+RG P+ P
Sbjct: 212 EPAKPPTAEAPAAEPAEPEEKPVHTRRGKPVIP 244


>tr|Q99773|Q99773_HUMAN Putative uncharacterized protein OS=Homo
           sapiens PE=2 SV=1
          Length = 285

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDP 81
           S  PRP+   P  RP  +     C P++A+R P PR P
Sbjct: 10  SAPPRPAAPHP--RPASRAFPQHCRPRDAERPPSPRSP 45


>tr|Q5KGR2|Q5KGR2_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNE02650 PE=4 SV=1
          Length = 676

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 195 IAESASQPIKA---RSASPTERTERPVHTKRGGPLAPPPRSNY 76
           +AE  S P  A   RS SP       V   RG PL+PPPR +Y
Sbjct: 418 LAERISGPRPAGRPRSPSPARSARSSVAPYRGRPLSPPPRDSY 460


>tr|Q98MZ5|Q98MZ5_RHILO Mlr0376 protein OS=Rhizobium loti GN=mlr0376
           PE=4 SV=1
          Length = 225

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPR 87
           +V +P  R  +L PG+  R++GR D+C  ++ +    PR
Sbjct: 36  RVENPEERRRRLDPGSEDRRRGRQDRCLSRQHEGDFHPR 74