DK947445
Clone id YMU02A01NGRL0015_O21
Library
Length 232
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_O21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTT
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGGCGGGGCGAGCGGTCCGCCTCTTTTGGT
GTGCACTGGTCGCTCCGTCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAATTGGCTGGGA
CGCGGATTCGGCGATGTTACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P07645
Definition sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain Rice)
Align length 35
Score (bit) 32.3
E-value 0.76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947445|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O21, 5'
(203 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ... 32 0.76
sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Ra... 32 1.3
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ... 32 1.3
sp|P52746|ZN142_HUMAN Zinc finger protein 142 OS=Homo sapiens GN... 31 1.7
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech... 31 1.7
sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo s... 31 2.2
sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=... 31 2.2
sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7 OS=Cryptoco... 31 2.2
sp|P0A3I5|CYAC_BORPE Cyclolysin-activating lysine-acyltransferas... 31 2.2
sp|P0A3I7|CYAC_BORPA Cyclolysin-activating lysine-acyltransferas... 31 2.2
sp|P0A3I6|CYAC_BORBR Cyclolysin-activating lysine-acyltransferas... 31 2.2
sp|Q8C1B1|CA1L1_MOUSE Calmodulin-regulated spectrin-associated p... 30 2.9
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ... 30 4.9
sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex prote... 30 4.9
sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 OS=Hom... 29 6.4
sp|Q2QYF3|SCR2_ORYSJ Protein SCARECROW 2 OS=Oryza sativa subsp. ... 29 6.4
sp|A2ZHL0|SCR2_ORYSI Protein SCARECROW 2 OS=Oryza sativa subsp. ... 29 6.4
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch... 29 8.4

>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
Rice) PE=3 SV=1
Length = 402

Score = 32.3 bits (72), Expect = 0.76
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRP 90
SP PRP RP RPR K TP DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Rattus
norvegicus GN=Rgnef PE=1 SV=1
Length = 1700

Score = 31.6 bits (70), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = -3

Query: 129 PVHTKRGGPLAPPPRSNY------ELFNCNNLNIRYWSWNYRGCWHQTC 1
P H+ RGGPL +S Y EL N + L ++ R WH+TC
Sbjct: 1409 PSHSFRGGPLQDQEKSRYLEKHREELANIHKLQYQFQQEQRR--WHRTC 1455


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
Length = 994

Score = 31.6 bits (70), Expect = 1.3
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1

Query: 203 KVTSPNPR-PSQLRPGARPRQKGRSDQCTPKEADRSPR 93
+ TSP PR P P A+ G D C+PK + SPR
Sbjct: 880 ETTSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|P52746|ZN142_HUMAN Zinc finger protein 142 OS=Homo sapiens
GN=ZNF142 PE=1 SV=3
Length = 1687

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3

Query: 177 QPIKARSASPTERTERPVHTKRGGPLAPPPRS 82
+P + SP E TE P+H R G L P P S
Sbjct: 1311 EPAQPAPGSPAETTEGPLHCSRCGLLCPSPAS 1342


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
Length = 1104

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPR 93
K T+P PRP+ RP RP G + TP + P+
Sbjct: 186 KPTAPTPRPTPARPTPRPAGAGSPARPTPGQGQPKPQ 222


>sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo
sapiens GN=SAC3D1 PE=1 SV=1
Length = 403

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDP 81
S PRP+ P P + C P++A+R P PR P
Sbjct: 10 SAPPRPAAPHP---PASRAFPQHCRPRDAERPPSPRSP 44


>sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=Mus
musculus GN=Rgnef PE=1 SV=1
Length = 1693

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = -3

Query: 129 PVHTKRGGPLAPPPRSNY------ELFNCNNLNIRYWSWNYRGCWHQTC 1
P H+ RGGPL +S Y EL N + L ++ R WH+TC
Sbjct: 1409 PSHSFRGGPLQDQEKSRYLEKQREELANIHKLQHQFQQEQRR--WHRTC 1455


>sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7
OS=Cryptococcus neoformans GN=DBP7 PE=3 SV=1
Length = 948

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3

Query: 201 SNIAESASQP----IKARSASPTERTERPVHTKRGGPLAPPP 88
SN+ +SAS P IK R++ PT ERP + GP P P
Sbjct: 116 SNVPKSASIPAPATIKHRTSLPTNAFERPPLPPQAGPSRPHP 157


>sp|P0A3I5|CYAC_BORPE Cyclolysin-activating lysine-acyltransferase
cyaC OS=Bordetella pertussis GN=cyaC PE=1 SV=1
Length = 185

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3

Query: 153 SPTERTERPVHTKRGGPLAPPPRSNYELFNCNNLNIRYWSW 31
SP R + PVH LAP Y L CN++ + Y SW
Sbjct: 30 SPMHR-DWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSW 69


>sp|P0A3I7|CYAC_BORPA Cyclolysin-activating lysine-acyltransferase
cyaC OS=Bordetella parapertussis GN=cyaC PE=3 SV=1
Length = 185

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3

Query: 153 SPTERTERPVHTKRGGPLAPPPRSNYELFNCNNLNIRYWSW 31
SP R + PVH LAP Y L CN++ + Y SW
Sbjct: 30 SPMHR-DWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSW 69


tr_hit_id A8JJG4
Definition tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 24
Score (bit) 66.2
E-value 8.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947445|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_O21, 5'
(203 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha... 66 8e-10
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens... 38 0.29
tr|Q2HGM2|Q2HGM2_CHAGB Putative uncharacterized protein OS=Chaet... 37 0.37
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob... 35 1.4
tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein OS=Jant... 33 5.4
tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc... 33 5.4
tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein OS=Mycob... 33 7.1
tr|Q99773|Q99773_HUMAN Putative uncharacterized protein OS=Homo ... 33 7.1
tr|Q5KGR2|Q5KGR2_CRYNE Putative uncharacterized protein OS=Crypt... 33 7.1
tr|Q98MZ5|Q98MZ5_RHILO Mlr0376 protein OS=Rhizobium loti GN=mlr0... 33 9.2
tr|Q1QLF5|Q1QLF5_NITHX Putative uncharacterized protein OS=Nitro... 33 9.2
tr|B8AC21|B8AC21_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A8I9W6|A8I9W6_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 9.2
tr|B7Q804|B7Q804_IXOSC Putative uncharacterized protein OS=Ixode... 33 9.2
tr|Q55SB5|Q55SB5_CRYNE Putative uncharacterized protein OS=Crypt... 33 9.2

>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
Length = 87

Score = 66.2 bits (160), Expect = 8e-10
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -3

Query: 72 LFNCNNLNIRYWSWNYRGCWHQTC 1
LFNCNNLNIRYWSWNYRGCWHQTC
Sbjct: 58 LFNCNNLNIRYWSWNYRGCWHQTC 81


>tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g225826 PE=4 SV=1
Length = 135

Score = 37.7 bits (86), Expect = 0.29
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3

Query: 36 SWNYRGCWHQTC 1
SWNYRGCWHQTC
Sbjct: 118 SWNYRGCWHQTC 129


>tr|Q2HGM2|Q2HGM2_CHAGB Putative uncharacterized protein
OS=Chaetomium globosum GN=CHGG_00632 PE=3 SV=1
Length = 538

Score = 37.4 bits (85), Expect = 0.37
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3

Query: 189 ESASQPIKARSASPTERTERPVHTKRGGPLAPPPRSNYELFNCNN 55
+S+S P A + T+++E T+ PLAPPPR N + N N+
Sbjct: 24 KSSSPPFTASTRDDTQKSEETTSTEISKPLAPPPRPNQQQQNSNS 68


>tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein
OS=Mycobacterium paratuberculosis GN=MAP_0822c PE=4 SV=1
Length = 254

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3

Query: 177 QPIKARSASPTERTERPVHTKRGGPLAP 94
+P K +A P E E+PVHT+RG P+ P
Sbjct: 212 EPAKPPAAEPAEPEEKPVHTRRGKPVIP 239


>tr|A6SYZ7|A6SYZ7_JANMA Uncharacterized conserved protein
OS=Janthinobacterium sp. (strain Marseille)
(Minibacterium massiliensis) GN=mma_1804 PE=4 SV=1
Length = 483

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDPT 78
++T P+ P ++PGARP G + Q P+ +PRPR T
Sbjct: 354 QMTRPHFSPGDMQPGARP--PGNAGQHRPERQQGNPRPRSET 393


>tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_122937 PE=4 SV=1
Length = 291

Score = 33.5 bits (75), Expect = 5.4
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDPTTSF 69
KV +P PR +QLR R R++G T ADR P P+ +F
Sbjct: 247 KVNAPAPRGAQLRGPGRIRREGPGRAVTRLAADRKPGPKIQLRAF 291


>tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein
OS=Mycobacterium avium (strain 104) GN=MAV_1010 PE=4
SV=1
Length = 259

Score = 33.1 bits (74), Expect = 7.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3

Query: 189 ESASQPI-KARSASPTERTERPVHTKRGGPLAP 94
E A P +A +A P E E+PVHT+RG P+ P
Sbjct: 212 EPAKPPTAEAPAAEPAEPEEKPVHTRRGKPVIP 244


>tr|Q99773|Q99773_HUMAN Putative uncharacterized protein OS=Homo
sapiens PE=2 SV=1
Length = 285

Score = 33.1 bits (74), Expect = 7.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1

Query: 194 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPRDP 81
S PRP+ P RP + C P++A+R P PR P
Sbjct: 10 SAPPRPAAPHP--RPASRAFPQHCRPRDAERPPSPRSP 45


>tr|Q5KGR2|Q5KGR2_CRYNE Putative uncharacterized protein
OS=Cryptococcus neoformans GN=CNE02650 PE=4 SV=1
Length = 676

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3

Query: 195 IAESASQPIKA---RSASPTERTERPVHTKRGGPLAPPPRSNY 76
+AE S P A RS SP V RG PL+PPPR +Y
Sbjct: 418 LAERISGPRPAGRPRSPSPARSARSSVAPYRGRPLSPPPRDSY 460


>tr|Q98MZ5|Q98MZ5_RHILO Mlr0376 protein OS=Rhizobium loti GN=mlr0376
PE=4 SV=1
Length = 225

Score = 32.7 bits (73), Expect = 9.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1

Query: 203 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPR 87
+V +P R +L PG+ R++GR D+C ++ + PR
Sbjct: 36 RVENPEERRRRLDPGSEDRRRGRQDRCLSRQHEGDFHPR 74