DK947447 |
Clone id |
YMU02A01NGRL0015_O23 |
Library |
YMU02 |
Length |
512 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_O23. 5' end sequence. |
Accession |
DK947447 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig2 |
Sequence |
GATGACTTTCTATCTCCCCCTACACTGACGGTCTTTCTCCTTCTCCCGTGTAGTCTGTGA ACCTGAAAAGAGCAATGGCGTCCTTGACCACAGCTTCTGCTCTCTCAGCAGCGAAGGTTG CTCCCGCCTCCCTTTCATGGAAGCAAACAGGAGCCGCGGGGCAGCAAGTGAAGATTCCGC ATCAGGCAGCGATGGCCAGCTCGGGGAGGGTTGTTATGTCAACGGCCAAATCTTTTGAAG CTTGCGAGGAAGGAGCAGTGCCTTGCCCTTGGCACCAAGCTGCGTTCCAAGTTTAAAATT AATTACCAGTTCTACCGAGTGTTTCCTAATGGCGAGGTGCAGTACCTTCATCCCAAGGAC GGAGTATACCCCGAGAAAGTGAACCCCGGCCGCAAGGGTGTTGGCGTGAACTTGCGCTCT ATTGGAGAGAATGTAAACCCAGCCACAGTCAAGTTCACTGGCAAGAACGCTTACTATTTG TGAGGAGCATGTTGCTGACCCCTTTATGATTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SA56 |
Definition |
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
90 |
Score (bit) |
154.0 |
E-value |
2.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947447|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_O23, 5' (512 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 154 2e-37 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 154 2e-37 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 153 4e-37 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 153 5e-37 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 151 2e-36 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 148 1e-35 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 145 8e-35 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 120 3e-27 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 120 3e-27 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 118 2e-26 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 117 2e-26 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 117 3e-26 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 115 1e-25 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 114 3e-25 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 113 5e-25 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 113 6e-25 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 106 6e-23 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 104 2e-22 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 103 5e-22 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 100 4e-21 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 98 3e-20 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 98 3e-20 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 98 3e-20 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 97 3e-20 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 92 1e-18 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 87 6e-17 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 33 1.0 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 33 1.0 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 33 1.0 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 33 1.0
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 154 bits (389), Expect = 2e-37 Identities = 71/90 (78%), Positives = 82/90 (91%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 115 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 174
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAYYL 480 R+GVG+N+RSIG+NV+P VKFTGK +Y L Sbjct: 175 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 154 bits (389), Expect = 2e-37 Identities = 71/90 (78%), Positives = 82/90 (91%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAYYL 480 R+GVG+N+RSIG+NV+P VKFTGK +Y L Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 153 bits (387), Expect = 4e-37 Identities = 72/90 (80%), Positives = 80/90 (88%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 118 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 177
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAYYL 480 R+GVG N RSIG+NV+P VKFTGK Y L Sbjct: 178 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 153 bits (386), Expect = 5e-37 Identities = 71/90 (78%), Positives = 82/90 (91%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP+GEVQYLHPKDGVYPEKVNPG Sbjct: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPG 182
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAYYL 480 R+GVG+N+RSIG+NV+P VKFTGK Y L Sbjct: 183 RQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 151 bits (381), Expect = 2e-36 Identities = 71/88 (80%), Positives = 78/88 (88%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ Q PNLLKLARKEQCLALGT+LRSK+KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 119 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 178
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAY 474 R+GVG N RSIG+N + VKFTGK Y Sbjct: 179 REGVGQNFRSIGKNKSAIEVKFTGKQVY 206
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 148 bits (374), Expect = 1e-35 Identities = 69/88 (78%), Positives = 79/88 (89%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ + PNLLKLARKEQCLALG +LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN G Sbjct: 116 IMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAG 175
Query: 391 RKGVGVNLRSIGENVNPATVKFTGKNAY 474 R+GVG N RSIG+NV+P VKFTGKN++ Sbjct: 176 RQGVGQNFRSIGKNVSPIEVKFTGKNSF 203
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 145 bits (367), Expect = 8e-35 Identities = 69/84 (82%), Positives = 75/84 (89%) Frame = +1
Query: 229 NLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGV 408 NLLKLARKEQCLALGT+LRSK+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQ 180
Query: 409 NLRSIGENVNPATVKFTGKNAYYL 480 N RSIG+N +P VKFTGK Y L Sbjct: 181 NFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 120 bits (302), Expect = 3e-27 Identities = 59/93 (63%), Positives = 75/93 (80%), Gaps = 2/93 (2%) Frame = +1
Query: 196 PARGGLLCQR-PNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVY 369 P G + ++ NLL LARKEQCLALGT++++ FKI +Y+ YR+FP+GEVQYLHPKDGV+ Sbjct: 46 PTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVF 105
Query: 370 PEKVNPGRKGVGVNLRSIGENVNPATVKFTGKN 468 PEKVNPGR GVG SIG+N+NPA +KFT K+ Sbjct: 106 PEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKS 138
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 120 bits (302), Expect = 3e-27 Identities = 56/85 (65%), Positives = 68/85 (80%) Frame = +1
Query: 211 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 390 ++ Q PNLLK +KEQCLAL T+LR+KFK+ FYRVFP+G+VQYLHP DGVYPEKVN G Sbjct: 105 IMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAG 164
Query: 391 RKGVGVNLRSIGENVNPATVKFTGK 465 R G N+R IG+NVNP VKF+G+ Sbjct: 165 RVGANQNMRRIGQNVNPIKVKFSGR 189
>sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1 Length = 141
Score = 118 bits (295), Expect = 2e-26 Identities = 58/83 (69%), Positives = 66/83 (79%), Gaps = 1/83 (1%) Frame = +1
Query: 229 NLLKLARKEQCLALGTKLRSKFKIN-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVG 405 NLL LA+KEQCLALGT+L+ KFKI+ Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR + Sbjct: 58 NLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASIN 117
Query: 406 VNLRSIGENVNPATVKFTGKNAY 474 SIG+NVNP VKFT K Y Sbjct: 118 SVDHSIGKNVNPINVKFTNKATY 140
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AEB4 |
Definition |
tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
90 |
Score (bit) |
160.0 |
E-value |
3.0e-38 |
Report |
|