DK947458 |
Clone id |
YMU02A01NGRL0015_P15 |
Library |
YMU02 |
Length |
231 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_P15. 5' end sequence. |
Accession |
DK947458 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1Contig2 |
Sequence |
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGG TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGAC CGATAGCGAAGCAGTACCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P09695 |
Definition |
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169) |
Align length |
36 |
Score (bit) |
29.6 |
E-value |
4.9 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6H5B3 |
Definition |
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata |
Align length |
54 |
Score (bit) |
89.0 |
E-value |
1.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947458|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_P15, 5' (201 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 89 1e-16 tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 75 2e-12 tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 58 2e-07 tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 52 2e-06 tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 52 1e-05 tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 52 2e-05 tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 50 4e-05 tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04 tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 49 1e-04 tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04 tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 48 2e-04 tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 48 3e-04 tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 46 0.001 tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 45 0.002 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003 tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.005 tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 43 0.007 tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009 tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 43 0.009 tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 43 0.009 tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 41 0.026 tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost... 40 0.075 tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 40 0.076 tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 40 0.076 tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin... 39 0.098
>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 79
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76
>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 87
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82
>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 90
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85
>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 85
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80
>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1 Length = 52
Score = 74.7 bits (182), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Frame = +2
Query: 59 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 199 G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47
>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 Length = 44
Score = 58.2 bits (139), Expect = 2e-07 Identities = 27/35 (77%), Positives = 28/35 (80%) Frame = -3
Query: 199 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 95 RY FAIGH G+FSL RWS LIHTGF VPHAT V A Sbjct: 10 RYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44
>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001 PE=4 SV=1 Length = 390
Score = 51.6 bits (122), Expect(2) = 2e-06 Identities = 23/31 (74%), Positives = 24/31 (77%) Frame = -3
Query: 199 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 107 RY FAI H +FSL RWS LIHTGF VPHAT Sbjct: 242 RYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272
Score = 23.9 bits (50), Expect(2) = 2e-06 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1
Query: 90 LAVLPATGLSPSGVQH 43 L +L ATG SPS VQH Sbjct: 274 LVMLSATGHSPSRVQH 289
>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1 Length = 101
Score = 52.0 bits (123), Expect = 1e-05 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = -1
Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55 HGT SLSV++EYLA +GGP F +DF CP LL + TGLSP+ Sbjct: 33 HGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78
>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1 Length = 259
Score = 51.6 bits (122), Expect = 2e-05 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = -1
Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55 HGT+SLSVT+EYL L+ GP F +DF CP LL + TGLSP+ Sbjct: 109 HGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154
>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment) OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1 Length = 171
Score = 50.4 bits (119), Expect = 4e-05 Identities = 27/48 (56%), Positives = 31/48 (64%) Frame = -1
Query: 201 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSP 58 HGT SLSV+QEYLAL+ GP F +D CP LL + A TGLSP Sbjct: 25 HGTGSLSVSQEYLALEDGPPIFRQDITCPALLDFTLDEA--SVTGLSP 70
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