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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947463
Clone id YMU02A01NGRL0015_P20
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_P20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGAT
GGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGG
CACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTG
ACCGATAGCGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTT
CCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCG
TCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTG
TCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAG
ATATATTTCCCTAAGGGTTTTTTCCCCAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_P20, 5'
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   2.1  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   4.6  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   6.1  
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     30   6.1  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   6.1  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   6.1  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +3

Query: 228 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 374
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 198 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 362
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 49  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 156
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 195  CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 64
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 49  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 156
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 4   ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 108
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 51
Score (bit) 84.7
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_P20, 5'
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    85   2e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    85   2e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    85   2e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    85   2e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    70   4e-11
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            58   2e-07
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    52   7e-07
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    49   1e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    48   2e-04
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    47   5e-04
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    47   6e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    47   6e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    45   0.001
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    45   0.002
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    44   0.004
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    44   0.004
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    44   0.005
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    43   0.009
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    42   0.015
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.026
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    40   0.045
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    40   0.045
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    40   0.075
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin...    39   0.097

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +1

Query: 40  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 73


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +1

Query: 40  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 79


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +1

Query: 40  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 82


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +1

Query: 40  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 77


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = +1

Query: 61  GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 44


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = -1

Query: 222 VFLGVPKQFCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 97
           V    P ++ FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 3   VLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 52.4 bits (124), Expect(2) = 7e-07
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = -1

Query: 222 VFLGVPKQFCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 109
           V   +P ++ FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 235 VLFTLPSRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 23.9 bits (50), Expect(2) = 7e-07
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 92  LAVLPATGLSPSGVQH 45
           L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = +1

Query: 4   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 147
           ES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +1

Query: 4   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 147
           ES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -2

Query: 218 FLGYQNNSASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 57
           F  + + + SLSV++EYLA +GGP  F +DF CP LL      +    TGLSP+
Sbjct: 28  FSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78