DK947463
Clone id YMU02A01NGRL0015_P20
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_P20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGAT
GGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGG
CACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTG
ACCGATAGCGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTT
CCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCG
TCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTG
TCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAG
ATATATTTCCCTAAGGGTTTTTTCCCCAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_P20, 5'
(447 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.1
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 4.6
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 6.1
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1 30 6.1
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 6.1
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 6.1

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +3

Query: 228 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 374
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 4.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3

Query: 198 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 362
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 29.6 bits (65), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1

Query: 49 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 156
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
Length = 4998

Score = 29.6 bits (65), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1

Query: 195 CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 64
C + G G+ LT WS G C+P + A + G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 29.6 bits (65), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1

Query: 49 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 156
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 29.6 bits (65), Expect = 6.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +1

Query: 4 ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 108
E ++GF L G AV C P DG++ V + AS NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 51
Score (bit) 84.7
E-value 2.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947463|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_P20, 5'
(447 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 85 2e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 85 2e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 85 2e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 85 2e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 70 4e-11
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 58 2e-07
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 52 7e-07
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 49 1e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 48 2e-04
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 47 5e-04
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 47 6e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 47 6e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 45 0.001
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 45 0.002
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 44 0.004
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 44 0.004
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.005
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 43 0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 43 0.009
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 43 0.009
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 42 0.015
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 41 0.026
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 40 0.045
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 40 0.045
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost... 40 0.075
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin... 39 0.097

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 84.7 bits (208), Expect = 2e-15
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 73


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 84.7 bits (208), Expect = 2e-15
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 79


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 84.7 bits (208), Expect = 2e-15
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 82


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 84.7 bits (208), Expect = 2e-15
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 77


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
(Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
Length = 52

Score = 70.5 bits (171), Expect = 4e-11
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +1

Query: 61 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSE 192
G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE
Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSE 44


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
Length = 44

Score = 58.2 bits (139), Expect = 2e-07
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = -1

Query: 222 VFLGVPKQFCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 97
V P ++ FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 3 VLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 52.4 bits (124), Expect(2) = 7e-07
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = -1

Query: 222 VFLGVPKQFCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 109
V +P ++ FAI H +FSL RWS LIHTGF VPHAT
Sbjct: 235 VLFTLPSRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 23.9 bits (50), Expect(2) = 7e-07
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2

Query: 92 LAVLPATGLSPSGVQH 45
L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00011927001 PE=4 SV=1
Length = 60

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1

Query: 4 ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 147
ES++ LL EA ECCT DG+SPVA S S S+ SSMGH + +R
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010999001 PE=4 SV=1
Length = 73

Score = 48.1 bits (113), Expect = 2e-04
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +1

Query: 4 ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 147
ES++ LL EA ECCT DG+SPVA S S S+ +SMGH + +R
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
Length = 101

Score = 47.0 bits (110), Expect = 5e-04
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -2

Query: 218 FLGYQNNSASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 57
F + + + SLSV++EYLA +GGP F +DF CP LL + TGLSP+
Sbjct: 28 FSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78