DK947469
Clone id YMU02A01NGRL0016_A04
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_A04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ATGAGACTTGGCTTTTGCCGCAGCAACGATGAGTATGCAAGAACTCTTCGAGGAGGGGCC
GCCCTGTGCAGCGCGAGTTGTTGATGGCGCTCTCAGAATGGTTGTGGCTGGTGTCACATG
GGGGCTTATAGCAGGATCTCATGATTCTCTGAAAGAAGGATATAGAGGGGTTTCGAGGGC
TGCGTATGTGGCTAAATCAGTTGGCAGGAATAGTGCATTATGGGGCTGTTGTGCGGGAAC
TTACTACGGATTCAATTGTGGCTTGGAAAGATTGAGGAGGAGAAGAGATTGGGCAAATGC
AGCTGTTGCTGGTGCTGTCACAGGTGCACTGCTAGCTGCGAAATCTGGGAGTGGCGCTAA
AATTGGTGCTACTTCAGCTACGTTCGCTGCTGTTGCAACTCTTTTACACCATGTATCTCC
ACTCCAATATCCACCTACTGGCCTTTAGCTTGAGAGTTTGGGGCTTACAAGCAAAACTGG
AAATATGTAAATGCTCACTTAACTGCAGAAGTATTGGGCCTCTCAATCAAGTAAATGAGC
CGCAAGGTTTTGCAGTGAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9Z0V7
Definition sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus
Align length 93
Score (bit) 37.7
E-value 0.038
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947469|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_A04, 5'
(557 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane transl... 38 0.038
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane transl... 37 0.050
sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane transl... 36 0.11
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane transl... 32 1.6
sp|Q4R3D6|ZMYM5_MACFA Zinc finger MYM-type protein 5 (Fragment) ... 31 4.7
sp|Q5XKK7|CO017_HUMAN Uncharacterized protein C15orf17 OS=Homo s... 31 4.7
sp|P29068|CBPT_THEVU Carboxypeptidase T OS=Thermoactinomyces vul... 30 6.1
sp|Q9UJ78|ZMYM5_HUMAN Zinc finger MYM-type protein 5 OS=Homo sap... 30 8.0
sp|P34116|G13B_DICDI Cell surface glycoprotein gp138B OS=Dictyos... 30 8.0

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane
translocase subunit Tim17-B OS=Mus musculus GN=Timm17b
PE=2 SV=1
Length = 172

Score = 37.7 bits (86), Expect = 0.038
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +2

Query: 35 MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 190
M+E E PC R+VD GA M V+ G + I G ++ ++ +RG A +
Sbjct: 1 MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIR 58

Query: 191 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 289
A +G + A+WG G + +CGL RLR + D
Sbjct: 59 APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane
translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B
PE=1 SV=1
Length = 172

Score = 37.4 bits (85), Expect = 0.050
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +2

Query: 35 MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 190
M+E E PC R+VD GA M V+ G + I G ++ ++ RG + A +
Sbjct: 1 MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIR 58

Query: 191 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 289
A +G + A+WG G + +CGL RLR + D
Sbjct: 59 APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane
translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B
PE=2 SV=1
Length = 172

Score = 36.2 bits (82), Expect = 0.11
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +2

Query: 35 MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 190
M+E E PC R+VD GA M V+ G + I G ++ ++ RG A +
Sbjct: 1 MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIR 58

Query: 191 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 289
A +G + A+WG G + +CGL RLR + D
Sbjct: 59 APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane
translocase subunit TIM17 OS=Saccharomyces cerevisiae
GN=TIM17 PE=1 SV=1
Length = 158

Score = 32.3 bits (72), Expect = 1.6
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +2

Query: 62 PCAARVVD---GALRM-VVAGVTWGLIAGSHDSL--KEGYRGVSRAAYVAKSVGRNSALW 223
PC +++ GA M + GV W I G +S + G +S A +G N +W
Sbjct: 9 PCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLGERGSGAMSAIKARAPVLGGNFGVW 68

Query: 224 GCCAGTYYGFNCGLERLRRRRD 289
G G + F+C ++ +R+R D
Sbjct: 69 G---GLFSTFDCAVKAVRKRED 87


>sp|Q4R3D6|ZMYM5_MACFA Zinc finger MYM-type protein 5 (Fragment)
OS=Macaca fascicularis GN=ZMYM5 PE=2 SV=2
Length = 656

Score = 30.8 bits (68), Expect = 4.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Frame = -2

Query: 178 PRNPSISFFQRIMRSCYKPPCDTSHNHSESAINNSRCTGRPLLEEFLH-------THRCC 20
P S SF + SC P C+ + N + N SRCT L E H TH+ C
Sbjct: 290 PVESSRSFQEFCSTSCVSP-CENNRNLKKGVFNKSRCTICSKLAEIRHEVSVNNVTHKLC 348


>sp|Q5XKK7|CO017_HUMAN Uncharacterized protein C15orf17 OS=Homo
sapiens GN=C15orf17 PE=1 SV=1
Length = 198

Score = 30.8 bits (68), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1

Query: 298 CSCCWCCHRCTASCEI 345
CSCCWCC ++SC +
Sbjct: 182 CSCCWCCLGDSSSCTL 197


>sp|P29068|CBPT_THEVU Carboxypeptidase T OS=Thermoactinomyces
vulgaris GN=cpt PE=1 SV=1
Length = 424

Score = 30.4 bits (67), Expect = 6.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2

Query: 110 GVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSAL-WGCCAGT 241
G + + +GS+ S ++ + S ++YV + RN WGCC G+
Sbjct: 213 GGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGS 257


>sp|Q9UJ78|ZMYM5_HUMAN Zinc finger MYM-type protein 5 OS=Homo
sapiens GN=ZMYM5 PE=1 SV=4
Length = 669

Score = 30.0 bits (66), Expect = 8.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Frame = -2

Query: 178 PRNPSISFFQRIMRSCYKPPCDTSHNHSESAINNSRCTGRPLLEEFLH-------THRCC 20
P S SF + SC P C+ + N + N SRCT L E H TH+ C
Sbjct: 303 PVESSKSFQEFYSTSCLSP-CENNWNLKKGVFNKSRCTICSKLAEIRHEVSVNNVTHKLC 361


>sp|P34116|G13B_DICDI Cell surface glycoprotein gp138B
OS=Dictyostelium discoideum GN=GP138B PE=1 SV=1
Length = 734

Score = 30.0 bits (66), Expect = 8.0
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -3

Query: 237 PAQQPHNALFLPTDLATYAALETPLYPSFRES*DPAISPHVTPATTILRAPSTTRAAQGG 58
P++Q + L ++ YA Y E+ P+ +P TP+TT PS+T G
Sbjct: 649 PSKQVGDNYVLTLNVGGYAVNLVVEYIEGGETPTPSTTPSTTPSTTPSTTPSSTPTQSPG 708

Query: 57 PSSKSSCILIVA 22
+S L ++
Sbjct: 709 DDGSTSSTLSIS 720


tr_hit_id A9TZ45
Definition tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 95
Score (bit) 115.0
E-value 1.0e-24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947469|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_A04, 5'
(557 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella paten... 115 1e-24
tr|A9NYH8|A9NYH8_PICSI Putative uncharacterized protein OS=Picea... 86 1e-15
tr|A7Q0D7|A7Q0D7_VITVI Chromosome chr7 scaffold_42, whole genome... 76 1e-12
tr|Q9LZH8|Q9LZH8_ARATH Putative uncharacterized protein F26K9_31... 71 3e-11
tr|A9NKV8|A9NKV8_PICSI Putative uncharacterized protein OS=Picea... 55 3e-06
tr|B8LMN9|B8LMN9_PICSI Putative uncharacterized protein OS=Picea... 52 3e-05
tr|Q8LGH9|Q8LGH9_ARATH Putative membrane channel protein OS=Arab... 50 6e-05
tr|Q65XV6|Q65XV6_ORYSJ Os05g0111200 protein OS=Oryza sativa subs... 50 8e-05
tr|B8AWZ4|B8AWZ4_ORYSI Putative uncharacterized protein OS=Oryza... 50 8e-05
tr|A3AZ87|A3AZ87_ORYSJ Putative uncharacterized protein OS=Oryza... 50 8e-05
tr|Q9ZV24|Q9ZV24_ARATH Putative membrane channel protein (At2g28... 50 1e-04
tr|O82688|O82688_HORVU Amino acid selective channel protein OS=H... 50 1e-04
tr|B3VTB6|B3VTB6_SORBI Amino acid selective channel protein OS=S... 48 3e-04
tr|B8A9Y0|B8A9Y0_ORYSI Putative uncharacterized protein OS=Oryza... 47 7e-04
tr|B6TFZ9|B6TFZ9_MAIZE Amino acid selective channel protein OS=Z... 45 0.002
tr|A9PFS3|A9PFS3_POPTR Putative uncharacterized protein OS=Popul... 45 0.003
tr|A7NZ04|A7NZ04_VITVI Chromosome chr6 scaffold_3, whole genome ... 45 0.003
tr|Q41050|Q41050_PEA Core protein OS=Pisum sativum PE=2 SV=1 44 0.006
tr|B7FGP0|B7FGP0_MEDTR Putative uncharacterized protein OS=Medic... 44 0.008
tr|B6T2H5|B6T2H5_MAIZE Amino acid selective channel protein OS=Z... 42 0.017
tr|A9U1R6|A9U1R6_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.017
tr|A9TN08|A9TN08_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.017
tr|Q4UIE5|Q4UIE5_THEAN Mitochondrial import inner membrane trans... 40 0.065
tr|Q4N769|Q4N769_THEPA Mitochondrial import inner membrane trans... 40 0.065
tr|Q93Z87|Q93Z87_BROIN Stress-inducible membrane pore protein OS... 40 0.11
tr|B6P7Q7|B6P7Q7_BRAFL Putative uncharacterized protein OS=Branc... 40 0.11
tr|Q9FP64|Q9FP64_ORYSJ Putative stress-inducible membrane pore p... 39 0.19
tr|B8A6Q5|B8A6Q5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.19
tr|B6AJQ7|B6AJQ7_9CRYT Mitochondrial import inner membrane trans... 39 0.19
tr|A9SDP8|A9SDP8_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32

>tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172788 PE=4 SV=1
Length = 146

Score = 115 bits (289), Expect = 1e-24
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +2

Query: 8 LAFAAATMSMQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAY 187
++ A M ++++E GPPC +R VDG +R+ +AGV WG+ GS+D++KEG+ G SRA Y
Sbjct: 1 MSSVAGHMDARDIYEAGPPCVSRAVDGFVRIGMAGVAWGMFMGSYDAVKEGHLGASRALY 60

Query: 188 VAKSVGRNSALWGCCAGTYYGFNCGLERLRRRRDW 292
VAKS+ RN WGC AG Y G NCG+E +R ++DW
Sbjct: 61 VAKSITRNGLGWGCFAGAYLGLNCGVESVRNKKDW 95


>tr|A9NYH8|A9NYH8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 85.9 bits (211), Expect = 1e-15
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2

Query: 26 TMSMQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVG 205
+M M ++ EEGPPC++R V+ +R VAG+TWG+ G ++ K +G +RA VAK VG
Sbjct: 4 SMDMWKVLEEGPPCSSRAVEAFVRFAVAGLTWGMFIGPYEVTKVS-QGSTRAILVAKLVG 62

Query: 206 RNSALWGCCAGTYYGFNCGLERLRRRRDW 292
+ G AG Y F+CG+ER RR++DW
Sbjct: 63 KCGLQCGSFAGIYTAFSCGIERYRRKKDW 91


>tr|A7Q0D7|A7Q0D7_VITVI Chromosome chr7 scaffold_42, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028011001
PE=4 SV=1
Length = 130

Score = 76.3 bits (186), Expect = 1e-12
Identities = 38/86 (44%), Positives = 52/86 (60%)
Frame = +2

Query: 35 MQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNS 214
M+ FE PC++ VD LR+ AG WGL +D+ K+G G+SR A+VAKSVG+ S
Sbjct: 1 MEGDFEGFVPCSSLAVDSILRVGTAGAIWGLCMSPYDASKKGLTGLSRTAFVAKSVGKIS 60

Query: 215 ALWGCCAGTYYGFNCGLERLRRRRDW 292
G AG + G C ++R RR+ DW
Sbjct: 61 FQCGLVAGVFSGTRCVVQRHRRQNDW 86


>tr|Q9LZH8|Q9LZH8_ARATH Putative uncharacterized protein F26K9_310
OS=Arabidopsis thaliana GN=F26K9_310 PE=2 SV=1
Length = 136

Score = 71.2 bits (173), Expect = 3e-11
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +2

Query: 35 MQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNS 214
M+E PC++ V+ LR+ AG +GL AG D+ K G GVS+A++VAKS+GR
Sbjct: 1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 215 ALWGCCAGTYYGFNCGLERLRRRRDW 292
G +G + +CGL+R R + DW
Sbjct: 61 FQCGLVSGVFTMTHCGLQRYRGKNDW 86


>tr|A9NKV8|A9NKV8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 147

Score = 54.7 bits (130), Expect = 3e-06
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +2

Query: 44 LFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALW 223
+ + G P R VDG L++ G + L+ ++ SL +G + K +G W
Sbjct: 18 VIDMGNPLLNRTVDGFLKIGTVGASRVLVEETYSSLSKGSVTKHDLEHTIKKMGIEGLKW 77

Query: 224 GCCAGTYYGFNCGLERLRRRRDW 292
G AG Y G G+ER+R RRDW
Sbjct: 78 GAVAGVYTGVEYGVERIRGRRDW 100


>tr|B8LMN9|B8LMN9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 145

Score = 51.6 bits (122), Expect = 3e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2

Query: 44 LFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALW 223
+ + G P R VDG L++ G + L+ ++ SL +G V++ +G W
Sbjct: 18 VIDMGNPLLNRTVDGFLKIGTVGASRVLVEETYSSLSKG--SVTKHDLEHTKMGIEGLKW 75

Query: 224 GCCAGTYYGFNCGLERLRRRRDW 292
G AG Y G G+ER+R RRDW
Sbjct: 76 GAVAGVYTGVEYGVERIRGRRDW 98


>tr|Q8LGH9|Q8LGH9_ARATH Putative membrane channel protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 148

Score = 50.4 bits (119), Expect = 6e-05
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = +2

Query: 23 ATMSMQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSV 202
+T + + G P VD L++ GVT L ++ ++++G S + K +
Sbjct: 11 STPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIEKGSLSKSTLEHALKKL 70

Query: 203 GRNSALWGCCAGTYYGFNCGLERLRRRRDW 292
+ WG G Y G G+ER+R RDW
Sbjct: 71 CKEGVYWGAAGGVYIGTEYGIERIRGSRDW 100


>tr|Q65XV6|Q65XV6_ORYSJ Os05g0111200 protein OS=Oryza sativa subsp.
japonica GN=P0016H04.12 PE=2 SV=1
Length = 146

Score = 50.1 bits (118), Expect = 8e-05
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +2

Query: 56 GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 235
G P R VDG L++ G + D L G + ++ K + + A WG A
Sbjct: 22 GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 81

Query: 236 GTYYGFNCGLERLRRRRDW 292
G Y G G+ER+R R DW
Sbjct: 82 GVYVGMEYGVERIRGRHDW 100


>tr|B8AWZ4|B8AWZ4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18168 PE=4 SV=1
Length = 146

Score = 50.1 bits (118), Expect = 8e-05
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +2

Query: 56 GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 235
G P R VDG L++ G + D L G + ++ K + + A WG A
Sbjct: 22 GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 81

Query: 236 GTYYGFNCGLERLRRRRDW 292
G Y G G+ER+R R DW
Sbjct: 82 GVYVGMEYGVERIRGRHDW 100


>tr|A3AZ87|A3AZ87_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016109 PE=4 SV=1
Length = 126

Score = 50.1 bits (118), Expect = 8e-05
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +2

Query: 56 GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 235
G P R VDG L++ G + D L G + ++ K + + A WG A
Sbjct: 2 GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 61

Query: 236 GTYYGFNCGLERLRRRRDW 292
G Y G G+ER+R R DW
Sbjct: 62 GVYVGMEYGVERIRGRHDW 80