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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947477
Clone id YMU02A01NGRL0016_A14
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_A14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGAAATGGGCAAACGACAGCAGATCTTGGAGGAGAGGAATGTGGAGGGAGACAGGGGAA
GGCTAATTAAGGCCAATTAAGTCATATAAAAGATGGCCTTCATGCGATGGACCGCTTTGA
AGTAAAGAGGATGCGCAAGCGACTGTGGTCGCCCGATGAGGACGACGCCCTGTGCTGCTC
TGTGGAGAGGCTTGGTTGCGGCAATTGGACTCACGTTGCTCGTCTCACCGTGTCGAAAAG
CTTGAACTGCTCATGAAGAACTAGCTAACACCAGTCACGGAGGTGAGAGGCAAATGTGGA
GGGTGGTTCAACCACCCCCCAAGGCAGCAACACTTTCGGATTTGGCTATGACTTTAGAGG
GCCATGGAAAGGGCTCTTTTGTGAGCGACCCTCAAACAACAATGTTTGAAGGCCTTTGGA
AGGCCCTCTTAAGTCCCAACTCCTTGAGTTCATAACTTGTGGACTTTAACCTCTTCAGTA
GCAAGATTCAAAATTCGTTGGATGTATCTTTGAGGTCTCTTGGAATCATTGCTCTGACAT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P20027
Definition sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare
Align length 33
Score (bit) 36.2
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947477|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_A14, 5'
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare...    36   0.11 
sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis ...    36   0.14 
sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis ...    36   0.14 
sp|Q9S7G7|MB3R1_ARATH Myb-related protein 3R-1 OS=Arabidopsis th...    35   0.18 
sp|Q9LTF7|MYB82_ARATH Transcription factor MYB82 OS=Arabidopsis ...    34   0.53 
sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis ...    32   1.5  
sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neuro...    32   1.5  
sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa su...    32   2.6  
sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoid...    31   3.4  
sp|P52236|CCMG_PARDP Thiol:disulfide interchange protein dsbE ho...    30   5.8  
sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus m...    30   7.6  
sp|Q9M0K4|LAF1_ARATH Transcription factor LAF1 OS=Arabidopsis th...    30   7.6  
sp|P27900|GL1_ARATH Trichome differentiation protein GL1 OS=Arab...    30   7.6  
sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa...    30   9.9  

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare
           GN=MYB2 PE=2 SV=3
          Length = 302

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 128 RMRKRLWSPDEDDALCCSVERLGCGNWTHVARL 226
           ++RK LWSP+ED+ L   + R G G W+ V RL
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRL 45


>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis
           thaliana GN=MYB86 PE=2 SV=1
          Length = 352

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 125 KRMRKRLWSPDEDDALCCSVERLGCGNWTHVARL 226
           +++RK LWSP+ED+ L   + R G G W+ V +L
Sbjct: 10  QKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKL 43


>sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis
           thaliana GN=MYB46 PE=2 SV=1
          Length = 280

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 104 AMDRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHVAR 223
           A    +VK+M+K LWSP+ED  L   +   G G W+ VA+
Sbjct: 9   AASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAK 48


>sp|Q9S7G7|MB3R1_ARATH Myb-related protein 3R-1 OS=Arabidopsis
           thaliana GN=MYB3R-1 PE=2 SV=1
          Length = 776

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 125 KRMRKRLWSPDEDDALCCSVERLGCGNWTHVA 220
           +R  K  W+P+ED+ LC +VER    NW  +A
Sbjct: 31  RRSTKGQWTPEEDEVLCKAVERFQGKNWKKIA 62


>sp|Q9LTF7|MYB82_ARATH Transcription factor MYB82 OS=Arabidopsis
           thaliana GN=MYB82 PE=1 SV=1
          Length = 201

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 131 MRKRLWSPDEDDALCCSVERLGCGNWTHVARLTVSKSLNCS*RTS*HQSRR*EANVEGGS 310
           +++ LW P+ED  L   VE  G GNW  ++R +  K    S R       R   N++ GS
Sbjct: 12  VKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLR--PNIKRGS 69

Query: 311 TTPQ 322
            +PQ
Sbjct: 70  MSPQ 73


>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis
           thaliana GN=MYB39 PE=2 SV=1
          Length = 360

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 125 KRMRKRLWSPDEDDALCCSVERLGCGNWTHVARL 226
           K ++K  W P+EDD L   +   G GNW  + +L
Sbjct: 11  KGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKL 44


>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1
           OS=Neurospora crassa GN=rca-1 PE=3 SV=2
          Length = 324

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 134 RKRLWSPDEDDALCCSVERLGCGNWTHVARL 226
           R+  WS  ED  L   V+ LG GNW +VAR+
Sbjct: 8   RRGPWSAGEDQRLIKLVKDLGPGNWVNVARI 38


>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa
           subsp. japonica GN=MYB4 PE=2 SV=2
          Length = 257

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 131 MRKRLWSPDEDDALCCSVERLGCGNW 208
           ++K  W+P+ED  L   ++R G GNW
Sbjct: 12  LKKGPWTPEEDKVLVAHIQRHGHGNW 37


>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum
           GN=mybL PE=3 SV=1
          Length = 855

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  LHAMDRFEVKRMRKRLWSPDEDDALCCSVERLGCGNW 208
           LH   +     ++K  WSP+ED  L  +V   G GNW
Sbjct: 639 LHRWHKTLDPSIKKGRWSPEEDQCLINAVNAYGKGNW 675



 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 128 RMRKRLWSPDEDDALCCSVERLGCGNWTHVARLTVSKSLN 247
           ++ K  W+P ED  L     ++G G W+ VA+L  +++ N
Sbjct: 701 QLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDN 740


>sp|P52236|CCMG_PARDP Thiol:disulfide interchange protein dsbE
           homolog OS=Paracoccus denitrificans (strain Pd 1222)
           GN=ccmG PE=3 SV=2
          Length = 179

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 435 DLRGPSKGLQTLLFEGRSQKSPFHGPLKS*PNPKVLLPWGVVEPPSTF 292
           DL+ P       L E      PFH  L + P  +V + WGV  PP TF
Sbjct: 100 DLKDPEGAALGFLSE---HGDPFHA-LAADPRGRVAIDWGVTAPPETF 143
tr_hit_id Q2QPW4
Definition tr|Q2QPW4|Q2QPW4_ORYSJ Myb-like DNA-binding domain containing protein, expressed OS=Oryza sativa subsp. japonica
Align length 62
Score (bit) 42.7
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947477|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_A14, 5'
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QPW4|Q2QPW4_ORYSJ Myb-like DNA-binding domain containing pr...    43   0.012
tr|A3CHV4|A3CHV4_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.012
tr|A2ZL22|A2ZL22_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.012
tr|A9SSU1|A9SSU1_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.061
tr|Q019J2|Q019J2_OSTTA Myb family transcription factor (ISS) OS=...    39   0.14 
tr|Q8ISM2|Q8ISM2_GIALA MYB OS=Giardia lamblia GN=MYB PE=2 SV=1         39   0.18 
tr|Q86R88|Q86R88_GIALA Myb OS=Giardia lamblia GN=myb PE=4 SV=1         39   0.18 
tr|A8BUF9|A8BUF9_GIALA Myb 1-like protein OS=Giardia lamblia ATC...    39   0.18 
tr|Q8S441|Q8S441_SORBI P-type R2R3 Myb protein (Fragment) OS=Sor...    39   0.23 
tr|Q5Y5S5|Q5Y5S5_HORVD Myb transcription factor OS=Hordeum vulga...    39   0.23 
tr|Q8W113|Q8W113_ARATH At1g09710/F21M12_10 OS=Arabidopsis thalia...    38   0.30 
tr|Q6R0D2|Q6R0D2_ARATH MYB transcription factor OS=Arabidopsis t...    38   0.30 
tr|O04493|O04493_ARATH F21M12.10 protein OS=Arabidopsis thaliana...    38   0.30 
tr|B6ADI1|B6ADI1_9CRYT Myb-like DNA-binding domain-containing pr...    38   0.30 
tr|Q8S438|Q8S438_SORBI P-type R2R3 Myb protein (Fragment) OS=Sor...    38   0.39 
tr|Q8S426|Q8S426_MAIZE P-type R2R3 Myb protein (Fragment) OS=Zea...    38   0.39 
tr|Q6F2C8|Q6F2C8_SOLDE MYB related protein, putative OS=Solanum ...    38   0.39 
tr|Q0JK18|Q0JK18_ORYSJ cDNA clone:J023084H22, full insert sequen...    38   0.39 
tr|B4FA78|B4FA78_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.39 
tr|A2ZWZ3|A2ZWZ3_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.39 
tr|A2WU70|A2WU70_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.39 
tr|A7PCT7|A7PCT7_VITVI Chromosome chr17 scaffold_12, whole genom...    37   0.51 
tr|A2F8E9|A2F8E9_TRIVA Myb-like DNA-binding domain containing pr...    37   0.51 
tr|Q9AS67|Q9AS67_ORYSJ Putative transcription factor (Myb) (Puta...    37   0.67 
tr|Q8S3X9|Q8S3X9_ORYSA Typical P-type R2R3 Myb protein (Fragment...    37   0.67 
tr|B8AW85|B8AW85_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.67 
tr|B6TWV8|B6TWV8_MAIZE MYB transcription factor TaMYB1 OS=Zea ma...    37   0.67 
tr|A2ZPQ0|A2ZPQ0_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.67 
tr|A2WL51|A2WL51_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.67 
tr|Q2AAT5|Q2AAT5_WHEAT Myb-related protein OS=Triticum aestivum ...    37   0.88 

>tr|Q2QPW4|Q2QPW4_ORYSJ Myb-like DNA-binding domain containing
           protein, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g33070 PE=4 SV=1
          Length = 409

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 38  ECGGRQGKAN*GQLSHIKDGLHAMDRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHV 217
           +CGG  G A  G +  +  G +A       ++RK LWSP+ED+ L   + R G G+W+ V
Sbjct: 5   DCGGGGGAAKGGGVLGVAGGNNAA--VVGGKVRKGLWSPEEDEKLVAYMLRSGQGSWSDV 62

Query: 218 AR 223
           AR
Sbjct: 63  AR 64


>tr|A3CHV4|A3CHV4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034876 PE=4 SV=1
          Length = 112

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 38  ECGGRQGKAN*GQLSHIKDGLHAMDRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHV 217
           +CGG  G A  G +  +  G +A       ++RK LWSP+ED+ L   + R G G+W+ V
Sbjct: 5   DCGGGGGAAKGGGVLGVAGGNNAA--VVGGKVRKGLWSPEEDEKLVAYMLRSGQGSWSDV 62

Query: 218 AR 223
           AR
Sbjct: 63  AR 64


>tr|A2ZL22|A2ZL22_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38516 PE=4 SV=1
          Length = 409

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 38  ECGGRQGKAN*GQLSHIKDGLHAMDRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHV 217
           +CGG  G A  G +  +  G +A       ++RK LWSP+ED+ L   + R G G+W+ V
Sbjct: 5   DCGGGGGAAKGGGVLGVAGGNNAA--VVGGKVRKGLWSPEEDEKLVAYMLRSGQGSWSDV 62

Query: 218 AR 223
           AR
Sbjct: 63  AR 64


>tr|A9SSU1|A9SSU1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166389 PE=4 SV=1
          Length = 682

 Score = 40.4 bits (93), Expect = 0.061
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 128 RMRKRLWSPDEDDALCCSVERLGCGNWT 211
           R R+RLW+P+ED AL  +V++ G GNWT
Sbjct: 211 RKRRRLWTPEEDLALIAAVDKYGEGNWT 238


>tr|Q019J2|Q019J2_OSTTA Myb family transcription factor (ISS)
           OS=Ostreococcus tauri GN=Ot05g01780 PE=4 SV=1
          Length = 652

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 137 KRLWSPDEDDALCCSVERLGCGNWTHVARL 226
           K  W+P+ED+ + C V   G GNWT +ARL
Sbjct: 436 KSTWTPEEDETVLCWVREHGTGNWTKLARL 465


>tr|Q8ISM2|Q8ISM2_GIALA MYB OS=Giardia lamblia GN=MYB PE=2 SV=1
          Length = 530

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 110 DRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHVARLTVSKSLNCS*RT----S*HQS 277
           D + ++R     W+P+ED+AL   V  LG  NW +VARL   +  +   R+    S H  
Sbjct: 401 DYYVIRRKPCTNWAPEEDEALIKVVAALGTRNWKNVARLVHRECPHLPERSADQCSQHWL 460

Query: 278 RR*EANVEGGSTTPQGSN 331
           R  + ++  G  TP+  N
Sbjct: 461 RVLDPSIVKGKWTPEDDN 478


>tr|Q86R88|Q86R88_GIALA Myb OS=Giardia lamblia GN=myb PE=4 SV=1
          Length = 530

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 110 DRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHVARLTVSKSLNCS*RT----S*HQS 277
           D + ++R     W+P+ED+AL   V  LG  NW +VARL   +  +   R+    S H  
Sbjct: 401 DYYVIRRKPCTNWAPEEDEALIKVVAALGTRNWKNVARLVHRECPHLPERSADQCSQHWL 460

Query: 278 RR*EANVEGGSTTPQGSN 331
           R  + ++  G  TP+  N
Sbjct: 461 RVLDPSIVKGKWTPEDDN 478


>tr|A8BUF9|A8BUF9_GIALA Myb 1-like protein OS=Giardia lamblia ATCC
           50803 GN=GL50803_8722 PE=4 SV=1
          Length = 530

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 110 DRFEVKRMRKRLWSPDEDDALCCSVERLGCGNWTHVARLTVSKSLNCS*RT----S*HQS 277
           D + ++R     W+P+ED+AL   V  LG  NW +VARL   +  +   R+    S H  
Sbjct: 401 DYYVIRRKPCTNWAPEEDEALIKVVAALGTRNWKNVARLVHRECPHLPERSADQCSQHWL 460

Query: 278 RR*EANVEGGSTTPQGSN 331
           R  + ++  G  TP+  N
Sbjct: 461 RVLDPSIVKGKWTPEDDN 478


>tr|Q8S441|Q8S441_SORBI P-type R2R3 Myb protein (Fragment)
           OS=Sorghum bicolor GN=Myb5 PE=4 SV=1
          Length = 99

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 128 RMRKRLWSPDEDDALCCSVERLGCGNWTHVAR 223
           ++RK LWSP+ED+ L   + R G G+W+ VAR
Sbjct: 23  KLRKGLWSPEEDERLVAYMLRSGQGSWSDVAR 54


>tr|Q5Y5S5|Q5Y5S5_HORVD Myb transcription factor OS=Hordeum vulgare
           var. distichum PE=2 SV=1
          Length = 388

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 128 RMRKRLWSPDEDDALCCSVERLGCGNWTHVAR 223
           ++RK LWSP+ED+ L   + R G G+W+ VAR
Sbjct: 29  KLRKGLWSPEEDERLVAYMLRSGQGSWSDVAR 60