DK947487 |
Clone id |
YMU02A01NGRL0016_B02 |
Library |
YMU02 |
Length |
594 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_B02. 5' end sequence. |
Accession |
DK947487 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL378Contig1 |
Sequence |
CTCTCTCGCCCCACAAACCCAGCACACAGACACAAAGTCCTCGGAGTACACTATATTTTT GGGGCAATCTTCTGACGGGGAGCCCCGAGCCCGACAGCCACAGCCATGGCTGCAGCAGTC AAGCTCACTTCCTCTTCTGTGGCTTCTTCCCCCACCATGCAGCCCCTGTATCTGCGAACA GGTTTCCATGGTTCCTCTTTACCGTCCTCCTCCTTCTCGGCTACACCTGCTTCAACAGGT AGCAGCTACAAGCTGGTCGTGTGCATGGCTTCCTCCACAGATCAGCCGATAATCATAGGG CTTGCTGCAGACTCTGGATGTGGAAAGAGTACATTCATGCGGCGGTTGACGAGCGTCTTC GGGGGTGCTGCGTCCCCTCCCAAGGGGGGTAACCCAGACTCCAACACTCTGATCAGTGAC ACCACTACTGTGATATGCTTGGATGATTACCATTCTCTGGACCGCACCGGTCGAAAGCAG AAGGGTGTTACAGCGCTTGACCCTCGGGCGAACAACTTTGATCTCATGTATGAACAGGTG AAGGCGATTAAAGAAGGGAAGTCCATTGAGAAGCCCATCTACAACCATGTGACA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
110 |
Score (bit) |
207.0 |
E-value |
2.0e-53 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947487|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0016_B02, 5' (594 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 207 2e-53 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 205 2e-52 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 191 3e-48 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 190 5e-48 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 180 6e-45 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 133 8e-31 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 115 2e-25 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 49 1e-05 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 49 1e-05 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 43 0.001 sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=ud... 40 0.007 sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (str... 39 0.015 sp|Q88WR0|URK_LACPL Uridine kinase OS=Lactobacillus plantarum GN... 39 0.015 sp|Q9HQC9|URK_HALSA Uridine kinase OS=Halobacterium salinarium G... 39 0.026 sp|P52623|UCK1_MOUSE Uridine-cytidine kinase 1 OS=Mus musculus G... 39 0.026 sp|Q4R4K2|UCK1_MACFA Uridine-cytidine kinase 1 OS=Macaca fascicu... 39 0.026 sp|Q9HA47|UCK1_HUMAN Uridine-cytidine kinase 1 OS=Homo sapiens G... 39 0.026 sp|A3CMP3|COAA_STRSV Pantothenate kinase OS=Streptococcus sangui... 39 0.026 sp|Q8EPT5|URK_OCEIH Uridine kinase OS=Oceanobacillus iheyensis G... 38 0.034 sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans GN=udk... 38 0.034 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 38 0.044 sp|Q730F4|URK_BACC1 Uridine kinase OS=Bacillus cereus (strain AT... 38 0.044 sp|P27515|URK1_YEAST Uridine kinase OS=Saccharomyces cerevisiae ... 38 0.044 sp|Q0P5A4|UCK1_BOVIN Uridine-cytidine kinase 1 OS=Bos taurus GN=... 37 0.058 sp|A1S796|URK_SHEAM Uridine kinase OS=Shewanella amazonensis (st... 37 0.075 sp|A0AIU6|URK_LISW6 Uridine kinase OS=Listeria welshimeri serova... 37 0.075 sp|A7GT59|URK_BACCN Uridine kinase OS=Bacillus cereus subsp. cyt... 37 0.075 sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium GN=... 37 0.098 sp|P67409|URK_SALTI Uridine kinase OS=Salmonella typhi GN=udk PE... 37 0.098 sp|A9N7M0|URK_SALPB Uridine kinase OS=Salmonella paratyphi B (st... 37 0.098
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 207 bits (528), Expect = 2e-53 Identities = 98/110 (89%), Positives = 107/110 (97%) Frame = +1
Query: 265 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 444 ++ + +QPI+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 51 VSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 110
Query: 445 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 DYHSLDRTGRK+KGVTALDP+AN+FDLMYEQVKAIKEGK+IEKPIYNHVT Sbjct: 111 DYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVT 160
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 205 bits (521), Expect = 2e-52 Identities = 97/114 (85%), Positives = 108/114 (94%) Frame = +1
Query: 253 LVVCMASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTV 432 ++ C+A + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTV Sbjct: 41 VITCLAGDS-QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTV 99
Query: 433 ICLDDYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 ICLDDYHSLDRTGRK+KGVTALDPRAN+FDLMYEQVKA+KEGK++EKPIYNHVT Sbjct: 100 ICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVT 153
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 191 bits (484), Expect = 3e-48 Identities = 90/107 (84%), Positives = 100/107 (93%) Frame = +1
Query: 274 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 453 S Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 454 SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 SLDR GRK + VTALDP+AN+FDLMYEQVKA+KEGK+++KPIYNHV+ Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVS 158
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 190 bits (482), Expect = 5e-48 Identities = 90/110 (81%), Positives = 100/110 (90%) Frame = +1
Query: 265 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 444 + + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 43 LITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 102
Query: 445 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 DYHSLDR GRK++ VTALDPRAN+FDLMYEQVKA+K G ++EKPIYNHVT Sbjct: 103 DYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVT 152
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 180 bits (456), Expect = 6e-45 Identities = 83/105 (79%), Positives = 92/105 (87%) Frame = +1
Query: 280 DQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSL 459 D+ ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDYH L Sbjct: 34 DKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCL 93
Query: 460 DRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 DR GRK KGVTAL P A NFDLMY QVKA+KEGKS++KPIYNHV+ Sbjct: 94 DRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVS 138
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 133 bits (334), Expect = 8e-31 Identities = 66/110 (60%), Positives = 77/110 (70%) Frame = +1
Query: 265 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 444 M + D+ ++IG+A DSGCGKSTF+RRLT +FG + TVICLD Sbjct: 1 MTTQLDRVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLD 43
Query: 445 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 DYHSLDR GRK GVTALDPRANNFDLMYEQ+K +K G+SI KPIYNH T Sbjct: 44 DYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHET 93
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 115 bits (287), Expect = 2e-25 Identities = 57/66 (86%), Positives = 59/66 (89%) Frame = +1
Query: 346 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKQKGVTALDPRANNFDL 525 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHSLDR GVTALDPRAN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDL 54
Query: 526 MYEQVK 543 MYEQVK Sbjct: 55 MYEQVK 60
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV=1 Length = 207
Score = 49.3 bits (116), Expect = 1e-05 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Frame = +1
Query: 274 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 453 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 454 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKT 94
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1 Length = 207
Score = 49.3 bits (116), Expect = 1e-05 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Frame = +1
Query: 274 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 453 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 454 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVT 594 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKT 94
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 43.1 bits (100), Expect = 0.001 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Frame = +1
Query: 265 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 444 M ++ P++IG+A + CGKST + R+ N ++N S I Sbjct: 1 MKNTLKLPLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHL 48
Query: 445 DYHSLDRTGRKQKGVTALDPRAN-------NFDLMYEQVKAIKEGKSIEKPIYNHVT 594 HS R ++ + A + + N NFDL+ E ++ + +GK++E P Y+ +T Sbjct: 49 SLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMIT 105
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GRU9 |
Definition |
tr|Q8GRU9|Q8GRU9_ORYSI Phosphoribulokinase OS=Oryza sativa subsp. indica |
Align length |
110 |
Score (bit) |
209.0 |
E-value |
7.0e-53 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |