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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947507
Clone id YMU02A01NGRL0016_C02
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_C02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTG
GAATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCC
TCGTTTCAACAACTCGGTGATATATATTTCCCTAAGGGTTTTTTCCTGAAAAAATCAATG
GAAAGACATACATAAAGAACTGACTCATCGACACTAAACCTCAAAGAATACTTGTG
■■Homology search results ■■ -
sp_hit_id Q8R4P4
Definition sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus musculus
Align length 45
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C02, 5'
         (236 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus...    29   6.4  

>sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus
           musculus GN=Tmc2 PE=2 SV=1
          Length = 888

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 172 FSGKNP*GNIYHRVVETRDPVQPNRCSIILTNPDLFIPTFFPRFI 38
           FSGKN   ++ H  +E   P    +    L NP L IP     F+
Sbjct: 708 FSGKNRMYDVLHETIENDFPKFLGKIFAFLANPGLIIPAILLMFL 752
tr_hit_id Q9N574
Definition tr|Q9N574|Q9N574_CAEEL Cytochrome p450 family protein 31A3 OS=Caenorhabditis elegans
Align length 40
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C02, 5'
         (236 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9N574|Q9N574_CAEEL Cytochrome p450 family protein 31A3 OS=Ca...    33   5.4  

>tr|Q9N574|Q9N574_CAEEL Cytochrome p450 family protein 31A3
           OS=Caenorhabditis elegans GN=cyp-31A3 PE=2 SV=2
          Length = 495

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 67  INPGLSRLLNIYLVERDPSFQQLGDIYFPKGFFLKKSMER 186
           I  G++ LLN+YLV RDPS  +  D++ P  F  + S+ R
Sbjct: 382 IPKGVTFLLNLYLVHRDPSQWKDPDVFDPDRFLPENSIAR 421