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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947516
Clone id YMU02A01NGRL0016_C13
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_C13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGTACATGCTGCGATTAGGGCTGACCCTTCAATTAAGCACACTGAGAAGCATGTGCCAGC
AGAGAGGAAGAGCTATAAAATGAAGAAGCTTACTTACGAGGAGAGGAAGGCTAACTTGAT
TGCTCGTCTCAATGCTATCAATGAGGTTGAGGATGATGATTAGTTAAATTATTATTGAAC
CTGACCTGAGTTTTGGACCATTATCTTTGCTTTGAGCTGAGCCTATCAAGGTGAAGACCT
TGTTTTGTACGGTCAGTTTTGCAGTGTAGTAGTTTTCGGCTTCCAAGGAATGGCTTTATT
GTCTTTGCCAGTCAGTTATTTGTTCATTAC
■■Homology search results ■■ -
sp_hit_id P93779
Definition sp|P93779|RL5_SOLME 60S ribosomal protein L5 (Fragment) OS=Solanum melongena
Align length 56
Score (bit) 65.9
E-value 6.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947516|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C13, 5'
         (330 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93779|RL5_SOLME 60S ribosomal protein L5 (Fragment) OS=Solan...    66   6e-11
sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa ...    65   8e-11
sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis t...    65   8e-11
sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa ...    65   8e-11
sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa ...    65   8e-11
sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus ...    64   2e-10
sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis t...    63   5e-10
sp|P26321|RL5_YEAST 60S ribosomal protein L5 OS=Saccharomyces ce...    42   0.001
sp|O59953|RL5_NEUCR 60S ribosomal protein L5 OS=Neurospora crass...    34   0.26 
sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melan...    33   0.59 
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 OS=Bombyx mori GN=R...    33   0.59 
sp|Q627R7|RL5_CAEBR 60S ribosomal protein L5 OS=Caenorhabditis b...    32   1.00 
sp|Q6JWW5|RL5_OIKDI 60S ribosomal protein L5 OS=Oikopleura dioic...    32   1.3  
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 OS=Caenorhabditis e...    31   1.7  
sp|Q1HQU2|RL5_AEDAE 60S ribosomal protein L5 OS=Aedes aegypti GN...    31   2.2  
sp|O74306|RL5B_SCHPO 60S ribosomal protein L5-B OS=Schizosacchar...    30   2.9  
sp|Q5XUC7|RL5_TOXCI 60S ribosomal protein L5 OS=Toxoptera citric...    29   6.5  

>sp|P93779|RL5_SOLME 60S ribosomal protein L5 (Fragment) OS=Solanum
           melongena GN=RPL5 PE=2 SV=1
          Length = 121

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEV---EDDD 160
           VHAAIR DPS K ++K  P   K Y +KKLTYEERKA LI RLNA+N     +DDD
Sbjct: 61  VHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDDD 116


>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa
           subsp. japonica GN=RPL5B PE=3 SV=1
          Length = 304

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINE---VEDDD 160
           VHAAIRADP++  + K  PA  K Y +KKLTYE+RKA+L+ RLNA+N     +DDD
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDD 298


>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis
           thaliana GN=RPL5B PE=2 SV=3
          Length = 301

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRA+P+ K TEK  P E K Y +KKLTYEERK  LI R+ A+N    DD
Sbjct: 242 VHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDD 294


>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa
           subsp. japonica GN=RPL5A PE=2 SV=1
          Length = 304

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINE---VEDDD 160
           VHAAIRADP++  + K  PA  K Y +KKLTYE+RKA+L+ RLNA+N     +DDD
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDD 298


>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa
           subsp. indica GN=RPL5A PE=2 SV=2
          Length = 304

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINE---VEDDD 160
           VHAAIRADP++  + K  PA  K Y +KKLTYE+RKA+L+ RLNA+N     +DDD
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDD 298


>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus
           GN=RPL5 PE=2 SV=1
          Length = 302

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRA+P  K ++K  P   K Y +KKLTY+ERKA L+ RLNA+N   D D
Sbjct: 242 VHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGD 294


>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis
           thaliana GN=ATL5 PE=2 SV=2
          Length = 301

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 31/53 (58%), Positives = 36/53 (67%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+ K T K  P + K Y +KKLTYEERK  LI R+ A+N    DD
Sbjct: 242 VHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDD 294


>sp|P26321|RL5_YEAST 60S ribosomal protein L5 OS=Saccharomyces
           cerevisiae GN=RPL5 PE=1 SV=3
          Length = 297

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = +2

Query: 5   HAAIRADPSIKHTEK-----HVPAERKSYKMKKLTYEERKANLIARLNAI 139
           H AIRADP+ K TEK        AE K Y+  KL+ EER A + A++ A+
Sbjct: 244 HEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAAL 293


>sp|O59953|RL5_NEUCR 60S ribosomal protein L5 OS=Neurospora crassa
           GN=rpl-5 PE=3 SV=1
          Length = 301

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +2

Query: 5   HAAIRADP-------SIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAI 139
           HAAIR DP       + K T++   AE   YK  KLT E+R A +  R+ A+
Sbjct: 247 HAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298


>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila
           melanogaster GN=RpL5 PE=1 SV=2
          Length = 299

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 5   HAAIRADPSIKHTEKHVPA-ERKSYKMKKLTYEERKANLIA 124
           H AIR DP+ K T K   A  +K +  KKLT E+RK  + A
Sbjct: 244 HQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAA 284
tr_hit_id O65081
Definition tr|O65081|O65081_PICMA Probable 60S ribosomal protein L5 (Fragment) OS=Picea mariana
Align length 53
Score (bit) 75.1
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947516|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C13, 5'
         (330 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O65081|O65081_PICMA Probable 60S ribosomal protein L5 (Fragme...    75   2e-12
tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Popul...    74   4e-12
tr|A9PFA8|A9PFA8_POPTR Putative uncharacterized protein OS=Popul...    74   5e-12
tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea...    74   5e-12
tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medic...    71   2e-11
tr|Q9AVH1|Q9AVH1_PEA Putative senescence-associated protein OS=P...    68   2e-10
tr|A7QAV5|A7QAV5_VITVI Chromosome chr5 scaffold_72, whole genome...    68   2e-10
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella paten...    67   3e-10
tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella paten...    66   7e-10
tr|A9PBZ9|A9PBZ9_POPTR Putative uncharacterized protein OS=Popul...    66   1e-09
tr|Q0JGY2|Q0JGY2_ORYSJ Os01g0896700 protein (Putative uncharacte...    65   1e-09
tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza...    65   1e-09
tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza...    65   1e-09
tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ...    65   1e-09
tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ...    65   1e-09
tr|A9PH69|A9PH69_POPTR Putative uncharacterized protein OS=Popul...    65   1e-09
tr|A9P8P0|A9P8P0_POPTR Putative uncharacterized protein OS=Popul...    65   1e-09
tr|A3A0I1|A3A0I1_ORYSJ Putative uncharacterized protein OS=Oryza...    65   1e-09
tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|B6TYP7|B6TYP7_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE...    65   2e-09
tr|B6THG9|B6THG9_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE...    65   2e-09
tr|A7R4R2|A7R4R2_VITVI Chromosome undetermined scaffold_763, who...    65   2e-09
tr|A7QYJ0|A7QYJ0_VITVI Chromosome undetermined scaffold_248, who...    65   2e-09
tr|Q38HU5|Q38HU5_SOLTU Putative uncharacterized protein OS=Solan...    64   3e-09
tr|Q56X31|Q56X31_ARATH Ribosomal protein OS=Arabidopsis thaliana...    63   8e-09
tr|Q9FL18|Q9FL18_ARATH 60S ribosomal protein L5 OS=Arabidopsis t...    60   5e-08
tr|Q6FJY0|Q6FJY0_CANGA Similar to uniprot|P26321 Saccharomyces c...    48   3e-04
tr|Q75C13|Q75C13_ASHGO ACR104Cp OS=Ashbya gossypii GN=ACR104C PE...    47   5e-04
tr|Q6CRR9|Q6CRR9_KLULA KLLA0D06941p OS=Kluyveromyces lactis GN=K...    47   6e-04

>tr|O65081|O65081_PICMA Probable 60S ribosomal protein L5 (Fragment)
           OS=Picea mariana GN=Sb58 PE=2 SV=1
          Length = 89

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+IK+TEKHVP  +K Y  +KLTYEERK  LIARLNA+N   D++
Sbjct: 34  VHAAIRADPTIKYTEKHVPKVQKHYLTRKLTYEERKNKLIARLNALNAGADEE 86


>tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 298

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+ K +EK +P E K Y +KKLTYEERKA L+ RL A+N   DDD
Sbjct: 242 VHAAIRADPTAKKSEKQLPKEHKRYNLKKLTYEERKAKLVERLKALNSAADDD 294


>tr|A9PFA8|A9PFA8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 297

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+ K +EK  P E K Y +KKLTYEERKA L+ RLNA+N   DD+
Sbjct: 242 VHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLVERLNALNSAADDE 294


>tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 297

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+IK++EKHVP  +K Y  +KLTYEERK  LIARLNA+N   D++
Sbjct: 242 VHAAIRADPTIKYSEKHVPKVQKHYLTRKLTYEERKNKLIARLNALNAGADEE 294


>tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/53 (62%), Positives = 41/53 (77%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+IK +EK  P + K Y +KKLTYEERKA L++RL A+N   DD+
Sbjct: 242 VHAAIRADPTIKKSEKQPPKQHKRYNLKKLTYEERKAKLVSRLAALNAAVDDE 294


>tr|Q9AVH1|Q9AVH1_PEA Putative senescence-associated protein
           OS=Pisum sativum GN=ssa-15 PE=2 SV=1
          Length = 279

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+ K  EK  P E K Y +KKLTY+ER+  LIARL A+N   D+D
Sbjct: 222 VHAAIRADPANKKAEKQPPKEHKRYNLKKLTYDERRTKLIARLEALNSAVDED 274


>tr|A7QAV5|A7QAV5_VITVI Chromosome chr5 scaffold_72, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034699001
           PE=4 SV=1
          Length = 307

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 34/53 (64%), Positives = 37/53 (69%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRA+P  K  EK  P E K Y +KKLTYEERKA LI RLNA+N    DD
Sbjct: 248 VHAAIRANPIQKKVEKQPPKEHKRYNLKKLTYEERKAKLIERLNALNSAAADD 300


>tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214065 PE=4 SV=1
          Length = 293

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 31/52 (59%), Positives = 42/52 (80%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDD 157
           VHAAIRADP+ + TEK  PAE++ +K++KLTYEER+A L+ RLNA+N   D+
Sbjct: 242 VHAAIRADPTQQKTEKKAPAEKRKWKIQKLTYEERQAALVKRLNAVNGDNDE 293


>tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_199314 PE=4 SV=1
          Length = 293

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 30/52 (57%), Positives = 43/52 (82%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDD 157
           VHAAIRADP+ + TEK  PAE++ +K++KLTY+ER+A L+ RLNAIN  +++
Sbjct: 242 VHAAIRADPTQQKTEKKAPAEKRKWKIQKLTYDERQAALVKRLNAINGEDEE 293


>tr|A9PBZ9|A9PBZ9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 297

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/53 (58%), Positives = 36/53 (67%)
 Frame = +2

Query: 2   VHAAIRADPSIKHTEKHVPAERKSYKMKKLTYEERKANLIARLNAINEVEDDD 160
           VHAAIRADP+ K +EK    E K Y +KKLTYEERK  L+ RLN  N   DD+
Sbjct: 242 VHAAIRADPTTKKSEKEPLKEHKKYNLKKLTYEERKEKLVERLNTFNSAADDE 294