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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947517
Clone id YMU02A01NGRL0016_C14
Library
Length 220
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_C14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTGTAACTGTGCGTAGTACCATCAGACGATTGAGGGAGCAGGTTGAAGGATAGACTGCTG
ATTTGAGTGCATGTAGTCAGAGTGGAATTGTAACTGCAGCTGCTGCAAATTTTGCTAATA
TGAAAACCTCTTGAACGTATTTAGTTGCTATGTGTCTCACAGCAGGGGAATGGATTCTCA
TTATTGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8RXU5
Definition sp|Q8RXU5|R37A2_ARATH 60S ribosomal protein L37a-2 OS=Arabidopsis thaliana
Align length 16
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947517|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C14, 5'
         (189 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RXU5|R37A2_ARATH 60S ribosomal protein L37a-2 OS=Arabidopsi...    33   0.45 
sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a OS=Pseudotsuga ...    32   1.0  
sp|Q5QM99|RL37A_ORYSJ 60S ribosomal protein L37a OS=Oryza sativa...    30   5.0  
sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a OS=Gossypium hi...    30   5.0  
sp|Q9SRK6|R37A1_ARATH Putative 60S ribosomal protein L37a-1 OS=A...    30   5.0  

>sp|Q8RXU5|R37A2_ARATH 60S ribosomal protein L37a-2 OS=Arabidopsis
           thaliana GN=RPL37AC PE=2 SV=1
          Length = 92

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   VTVRSTIRRLREQVEG 50
           VTVRSTIRRLREQ+EG
Sbjct: 77  VTVRSTIRRLREQIEG 92


>sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a OS=Pseudotsuga
           menziesii GN=RPL37A PE=3 SV=1
          Length = 92

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 3   VTVRSTIRRLREQVEG 50
           VTVRSTIRRLREQ EG
Sbjct: 77  VTVRSTIRRLREQTEG 92


>sp|Q5QM99|RL37A_ORYSJ 60S ribosomal protein L37a OS=Oryza sativa
           subsp. japonica GN=Os01g0679700 PE=1 SV=1
          Length = 92

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   VTVRSTIRRLREQVE 47
           VTVRSTIRRLREQ E
Sbjct: 77  VTVRSTIRRLREQTE 91


>sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a OS=Gossypium
           hirsutum GN=RPL37A PE=3 SV=1
          Length = 92

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   VTVRSTIRRLREQVE 47
           VTVRSTIRRLREQ E
Sbjct: 77  VTVRSTIRRLREQTE 91


>sp|Q9SRK6|R37A1_ARATH Putative 60S ribosomal protein L37a-1
           OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1
          Length = 92

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   VTVRSTIRRLREQVE 47
           VTVRSTIRRLREQ E
Sbjct: 77  VTVRSTIRRLREQTE 91
tr_hit_id A8B9Q0
Definition tr|A8B9Q0|A8B9Q0_GIALA SMC4-like protein OS=Giardia lamblia ATCC 50803
Align length 60
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947517|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C14, 5'
         (189 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8B9Q0|A8B9Q0_GIALA SMC4-like protein OS=Giardia lamblia ATCC...    33   9.4  

>tr|A8B9Q0|A8B9Q0_GIALA SMC4-like protein OS=Giardia lamblia ATCC
           50803 GN=GL50803_17465 PE=4 SV=1
          Length = 1435

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +3

Query: 6   TVRSTIRRLREQVEG*TADLSACSQSGIVTAAAANFANMKTS*TYLVAMCLTAGEWILII 185
           T+   I  LR+Q+ G TA LS   QSG+ TAAA            L  +C     WIL+I
Sbjct: 429 TISQNIVPLRKQLIGVTARLSTIRQSGLATAAA------------LGELCCNIMLWILLI 476