BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C18, 5'
         (240 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UTN4|PFS2_SCHPO Polyadenylation factor subunit 2 OS=Schizos...    33   0.44 
sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing pr...    29   6.4  
sp|P53450|FOS_FUGRU Proto-oncogene protein c-fos OS=Fugu rubripe...    29   8.4  

>sp|Q9UTN4|PFS2_SCHPO Polyadenylation factor subunit 2
           OS=Schizosaccharomyces pombe GN=pfs2 PE=2 SV=1
          Length = 509

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 179 GELSAWRNLTTNDNK*KEQHDEAGRCRRW*SDAASVTAKDDAG 51
           GE + W  LT N     + HD A RC  W +D   + + D  G
Sbjct: 103 GEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRWLISGDGGG 145


>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing
           protein CG31690 OS=Drosophila melanogaster GN=CG31690
           PE=2 SV=2
          Length = 849

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -3

Query: 79  LPLLPKMMRAILMLRPGQVVSE 14
           LPLLP+  RA+L LR G++++E
Sbjct: 652 LPLLPQKQRAVLHLRLGEILAE 673


>sp|P53450|FOS_FUGRU Proto-oncogene protein c-fos OS=Fugu rubripes
           GN=fos PE=3 SV=1
          Length = 376

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 73  TEAASDHHRLHRPASSC---CSFHLLSFVVKFLHAESSPSC*LAH 198
           T ++SD   L  P  +C   C+    SFV  F  AE+ P+C +AH
Sbjct: 310 TISSSDFEPLCTPVVTCTPACTTLTSSFVFTFPEAETFPTCGVAH 354

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_C18, 5'
         (240 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8KJS2|B8KJS2_9GAMM A/G-specific adenine glycosylase OS=gamma...    33   5.4  
tr|B6JZY6|B6JZY6_SCHJP Polyadenylation factor subunit 2 OS=Schiz...    33   7.0  

>tr|B8KJS2|B8KJS2_9GAMM A/G-specific adenine glycosylase OS=gamma
           proteobacterium NOR5-3 GN=mutY PE=4 SV=1
          Length = 359

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 20  HHLPWPQHQYRPHHLWQ*RKLRLITIACTDLPHHA---VLFIYCHL*LNSSMLKVLHHAS 190
           H+LPW Q    P+H+W    +   T   T +P++      F   H   ++   +VLHH S
Sbjct: 18  HNLPW-QRDATPYHVWLSEIMLQQTQVATVIPYYERFIASFPDIHALASAETDQVLHHWS 76

Query: 191 SLMYY 205
            L YY
Sbjct: 77  GLGYY 81


>tr|B6JZY6|B6JZY6_SCHJP Polyadenylation factor subunit 2
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_01175
           PE=4 SV=1
          Length = 499

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 179 GELSAWRNLTTNDNK*KEQHDEAGRCRRW*SDAASVTAKDDAG 51
           GE + W  LT N     + HD A RC  W +D   + + D  G
Sbjct: 103 GEFTLWNGLTFNFELINQSHDYAVRCAEWSNDGRWLLSGDGGG 145