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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947528
Clone id YMU02A01NGRL0016_D01
Library
Length 357
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_D01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGGAATACTTGAAGGATCC
CAGTAAGTTTGCTGTTGCAGCTGCTCCTGCAGCATCTGCCTCTGATACTCCTGCTCCTGC
GGCAGCAGTGGAGGAAGAGAAAGCAGAACCTGAGGAAGCGTCGGATGATGACATGGGTTT
CAGTTTGTTTGATTAGGGTTAGGTGTACTAGCTTAGCAACTTTGGAATGTAAAGCACAAA
TTCCAGTTTTGACATATGCGACAAGATCAAACTTGGAACTATATCAATGTTTTGCACTGA
AAGTTATTCTGAATTTTCTTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P41095
Definition sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica
Align length 51
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947528|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D01, 5'
         (288 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sa...    30   2.8  
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays...    29   6.3  

>sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza
           sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3
          Length = 319

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KEYLKDPSKF                              SD D+G SLFD
Sbjct: 269 KEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319


>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays
           GN=RP-P0 PE=1 SV=3
          Length = 319

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KEYLKDPSKF                              SD++MGFSLFD
Sbjct: 269 KEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318
tr_hit_id A9RZU5
Definition tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0 OS=Physcomitrella patens subsp. patens
Align length 51
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947528|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D01, 5'
         (288 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0 OS=Physco...    37   0.64 
tr|Q9NHP0|Q9NHP0_SARCR 60S acidic ribosomal protein P0 OS=Sarcop...    33   9.3  
tr|Q70YZ3|Q70YZ3_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx...    33   9.3  
tr|Q70VX6|Q70VX6_TIMBA 60S acidic ribosomal protein P0 OS=Timarc...    33   9.3  
tr|Q5UAU1|Q5UAU1_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx...    33   9.3  

>tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_179848 PE=3 SV=1
          Length = 319

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/51 (41%), Positives = 21/51 (41%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KEYLKDPSKF                              SDDDMGFSLFD
Sbjct: 269 KEYLKDPSKFAVAAAPAATESSSAPAAAAKEEEKVEEKEESDDDMGFSLFD 319


>tr|Q9NHP0|Q9NHP0_SARCR 60S acidic ribosomal protein P0
           OS=Sarcophaga crassipalpis PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KEY+KDPSKF                               DDDMGF LFD
Sbjct: 266 KEYIKDPSKFAAAAAATAPAAGAAAAEKKEEAKKEESEEEEDDDMGFGLFD 316


>tr|Q70YZ3|Q70YZ3_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx
           mori PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KE++KDPSKF                              SDDDMGF LFD
Sbjct: 266 KEFIKDPSKFAAAAAAVAPSAAAAPAEKKEEKKEEKEEEESDDDMGFGLFD 316


>tr|Q70VX6|Q70VX6_TIMBA 60S acidic ribosomal protein P0 OS=Timarcha
           balearica GN=rpP0 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KE++KDPSKF                               DDDMGFSLFD
Sbjct: 266 KEFIKDPSKFASAAAPTAAVAAPAAQPEAAKAEEKEASESEDDDMGFSLFD 316


>tr|Q5UAU1|Q5UAU1_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx
           mori GN=RpP0 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 1   KEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 153
           KE++KDPSKF                              SDDDMGF LFD
Sbjct: 266 KEFIKDPSKFAAVAAAVAPSAAAAPAEKKEEKKEEKEEEESDDDMGFGLFD 316