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DK947543
Clone id YMU02A01NGRL0016_D18
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_D18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAGCGTTAAAAGCTGCAAACCTCCTGAAGTTTATAAGGGAAGAGGTATAAAATATCAAA
ATGAAATTATACGTAGAAAAGAGGGGGGGAAGAAATAACTCGTGTCATATATTCTAGGAA
CCAAATTAGTTTCCAATAAACAAATCAGACTTGCCTCAACTTAAATCTTTGGAATTGGAC
CCAAAAAAGCCACTTGGATTCGTGATTAATTAGGTCTCAGCGATAACACCAAGGTTAATA
ATCTGACTCGGCACCAAATTAACTGGATTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id P26872
Definition sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Marchantia polymorpha
Align length 56
Score (bit) 68.9
E-value 7.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947543|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D18, 5'
         (272 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Mar...    69   7e-12
sp|P05488|RT13_TOBAC Ribosomal protein S13, mitochondrial OS=Nic...    59   1e-08
sp|P07924|RT13_WHEAT Ribosomal protein S13, mitochondrial OS=Tri...    57   4e-08
sp|P08977|RT13_MAIZE Ribosomal protein S13, mitochondrial OS=Zea...    55   8e-08
sp|P23209|RT13_DAUCA Ribosomal protein S13, mitochondrial OS=Dau...    55   8e-08
sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=...    55   1e-07
sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial OS=Oen...    51   2e-06
sp|A5N4R2|RL6_CLOK5 50S ribosomal protein L6 OS=Clostridium kluy...    46   7e-05
sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=A...    46   7e-05
sp|A1T0C7|RL6_PSYIN 50S ribosomal protein L6 OS=Psychromonas ing...    45   9e-05
sp|Q49ZF3|RL6_STAS1 50S ribosomal protein L6 OS=Staphylococcus s...    45   1e-04
sp|Q4L899|RL6_STAHJ 50S ribosomal protein L6 OS=Staphylococcus h...    45   1e-04
sp|Q8CRH5|RL6_STAES 50S ribosomal protein L6 OS=Staphylococcus e...    45   1e-04
sp|Q5HM14|RL6_STAEQ 50S ribosomal protein L6 OS=Staphylococcus e...    45   1e-04
sp|Q7A084|RL6_STAAW 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A8Z342|RL6_STAAT 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q6G786|RL6_STAAS 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q6GEJ8|RL6_STAAR 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q7A466|RL6_STAAN 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q99S36|RL6_STAAM 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A6QJ77|RL6_STAAE 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q5HDX3|RL6_STAAC 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q2YYL2|RL6_STAAB 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A5IV19|RL6_STAA9 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q2FW21|RL6_STAA8 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|Q2FEQ4|RL6_STAA3 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A6U3W0|RL6_STAA2 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A7X5E1|RL6_STAA1 50S ribosomal protein L6 OS=Staphylococcus a...    45   1e-04
sp|A4XBN1|RL6_SALTO 50S ribosomal protein L6 OS=Salinispora trop...    45   1e-04
sp|A8M514|RL6_SALAI 50S ribosomal protein L6 OS=Salinispora aren...    45   1e-04

>sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial
           OS=Marchantia polymorpha GN=RPS13 PE=3 SV=2
          Length = 120

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 35/56 (62%), Positives = 43/56 (76%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYILGT L SNKQ+++A T IFGIGPKKA  + D LGLSD  KVN LT++Q + I
Sbjct: 1   MSYILGTNLNSNKQVKIALTRIFGIGPKKAIQVCDQLGLSDTIKVNKLTKYQFDQI 56


>sp|P05488|RT13_TOBAC Ribosomal protein S13, mitochondrial
           OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2
          Length = 116

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/54 (53%), Positives = 40/54 (74%)
 Frame = +3

Query: 108 YILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           YI G +LV ++Q+R+AST I GIGPKKA  +R  LG+S N K+  LT++QI+ I
Sbjct: 3   YISGARLVGDEQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQI 56


>sp|P07924|RT13_WHEAT Ribosomal protein S13, mitochondrial
           OS=Triticum aestivum GN=RPS13 PE=3 SV=2
          Length = 116

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G + + ++Q+R+AST + GIGPKKA  +R  LG+S N K+N LT++QI+ I
Sbjct: 1   MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQI 56


>sp|P08977|RT13_MAIZE Ribosomal protein S13, mitochondrial OS=Zea
           mays GN=RPS13 PE=3 SV=2
          Length = 129

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 27/56 (48%), Positives = 42/56 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G + + ++Q+R+AST + GIGPKKA  +R  LG+S N K++ LT++QI+ I
Sbjct: 1   MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKIHELTKYQIDQI 56


>sp|P23209|RT13_DAUCA Ribosomal protein S13, mitochondrial OS=Daucus
           carota GN=RPS13 PE=3 SV=1
          Length = 116

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/52 (50%), Positives = 39/52 (75%)
 Frame = +3

Query: 108 YILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQIN 263
           YI G +LV++KQ+R+A T ++GIGPKKA  +   LG+S N K+  LT++QI+
Sbjct: 3   YISGARLVADKQVRIALTKMYGIGPKKAIQVCYRLGISGNIKIKELTKYQID 54


>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial
           OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2
          Length = 101

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +3

Query: 6   VKSCKPPEVYKGRGIKYQNEIIRRKEGGKK 95
           VKSCKPPEVYKG+GI+Y+NEII +K+G KK
Sbjct: 72  VKSCKPPEVYKGKGIQYRNEIIHKKQGKKK 101


>sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial
           OS=Oenothera bertiana GN=RPS13 PE=3 SV=2
          Length = 114

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G +LV+++Q+R+AST + GIGPKKA  +R  LG   N K   LT++QI+ I
Sbjct: 1   MSYISGARLVADEQVRIASTKMDGIGPKKAIQVRSRLG--GNIKRKELTKYQIDQI 54


>sp|A5N4R2|RL6_CLOK5 50S ribosomal protein L6 OS=Clostridium
           kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
           GN=rplF PE=3 SV=1
          Length = 180

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 21/32 (65%), Positives = 26/32 (81%), Gaps = 2/32 (6%)
 Frame = +3

Query: 6   VKSCKPPEVYKGRGIKYQNEIIRRKEG--GKK 95
           ++S + PE YKG+GIKY NE+IRRKEG  GKK
Sbjct: 149 IRSWRKPEPYKGKGIKYDNEVIRRKEGKTGKK 180


>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic
           OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1
          Length = 223

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 20/33 (60%), Positives = 27/33 (81%), Gaps = 2/33 (6%)
 Frame = +3

Query: 3   SVKSCKPPEVYKGRGIKYQNEIIRRKEG--GKK 95
           +V+  +PPE YKG+G+KY +EI+RRKEG  GKK
Sbjct: 190 TVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKK 222


>sp|A1T0C7|RL6_PSYIN 50S ribosomal protein L6 OS=Psychromonas
           ingrahamii (strain 37) GN=rplF PE=3 SV=1
          Length = 177

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 17/30 (56%), Positives = 25/30 (83%)
 Frame = +3

Query: 6   VKSCKPPEVYKGRGIKYQNEIIRRKEGGKK 95
           +++ +PPE YKG+G++Y NEI+RRKE  KK
Sbjct: 148 IRAFRPPEPYKGKGVRYANEIVRRKEAKKK 177
tr_hit_id Q1XG94
Definition tr|Q1XG94|Q1XG94_PHYPA Ribosomal protein S13 OS=Physcomitrella patens
Align length 56
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947543|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D18, 5'
         (272 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XG94|Q1XG94_PHYPA Ribosomal protein S13 OS=Physcomitrella p...    69   1e-10
tr|B0BLG5|B0BLG5_CYCTA Ribosomal protein S13 OS=Cycas taitungens...    64   3e-09
tr|Q5K5E1|Q5K5E1_9LILI Ribosomal protein S13 OS=Campynema linear...    63   6e-09
tr|Q5K6M2|Q5K6M2_9ASPA RPS13 OS=Asphodelus sp. Quagliariello 161...    61   2e-08
tr|Q3LFF2|Q3LFF2_9ASPA Mitochondrial ribosomal protein RPS13 OS=...    61   2e-08
tr|Q5K5E5|Q5K5E5_9ASPA Ribosomal protein S13 OS=Tecophilaea viol...    61   3e-08
tr|Q5U6E3|Q5U6E3_BETVU Ribosomal protein S13 OS=Beta vulgaris su...    60   4e-08
tr|Q34010|Q34010_BETVU Ribosomal protein S13 (Fragment) OS=Beta ...    60   4e-08
tr|Q9G2W3|Q9G2W3_MAGSO Ribosomal protein S13 OS=Magnolia soulang...    60   7e-08
tr|Q8HQ63|Q8HQ63_9LILI Ribosomal protein S13 OS=Alstroemeria hyb...    60   7e-08
tr|Q85IK7|Q85IK7_9ASPA Ribosomal protein S13 OS=Freesia sp. QC-2...    60   7e-08
tr|Q5K5D9|Q5K5D9_9LILI Ribosomal protein S13 OS=Philesia magella...    60   7e-08
tr|Q5K5D8|Q5K5D8_9LILI Ribosomal protein S13 OS=Lapageria rosea ...    60   7e-08
tr|Q5K5D7|Q5K5D7_9LILI Ribosomal protein S13 OS=Ripogonum elseya...    60   7e-08
tr|Q53IW5|Q53IW5_9ASPA Mitochondrial ribosomal protein RPS13 OS=...    60   7e-08
tr|Q5K5E0|Q5K5E0_9LILI Ribosomal protein S13 OS=Xerophyllum tena...    59   9e-08
tr|Q5K6L7|Q5K6L7_9ASPA RPS13 OS=Danae racemosa PE=4 SV=1               59   1e-07
tr|Q5K5D5|Q5K5D5_RUSAC Ribosomal protein S13 OS=Ruscus aculeatus...    59   1e-07
tr|Q5MA11|Q5MA11_TOBAC Ribosomal protein S13 OS=Nicotiana tabacu...    59   2e-07
tr|Q9MFB7|Q9MFB7_BETVU Ribosomal protein S13 OS=Beta vulgaris su...    58   2e-07
tr|Q8HQ62|Q8HQ62_9ASPA Ribosomal protein S13 OS=Iris sp. CQ-2001...    58   2e-07
tr|Q8HQ61|Q8HQ61_9LILI Ribosomal protein S13 OS=Tulipa sp. CQ-20...    58   2e-07
tr|Q85IK3|Q85IK3_9LILI Ribosomal protein S13 OS=Posidonia oceani...    58   2e-07
tr|Q5K5F1|Q5K5F1_9ASPA Ribosomal protein S13 OS=Milligania stylo...    58   2e-07
tr|Q5K5E9|Q5K5E9_9ASPA Ribosomal protein S13 OS=Doryanthes palme...    58   2e-07
tr|Q5K5E7|Q5K5E7_BEHRE Ribosomal protein S13 OS=Behnia reticulat...    58   2e-07
tr|Q5K5E6|Q5K5E6_9ASPA Ribosomal protein S13 OS=Blandfordia puni...    58   2e-07
tr|Q5K5E4|Q5K5E4_9LILI Ribosomal protein S13 OS=Luzuriaga radica...    58   2e-07
tr|Q53IV4|Q53IV4_9ASPA Mitochondrial ribosomal protein RPS13 OS=...    58   2e-07
tr|Q53IV3|Q53IV3_9ASPA Mitochondrial ribosomal protein RPS13 OS=...    58   2e-07

>tr|Q1XG94|Q1XG94_PHYPA Ribosomal protein S13 OS=Physcomitrella
           patens GN=rps13 PE=4 SV=1
          Length = 122

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYILGT LV N+Q+ +A T IFG+GPKKA  + D LGL+DN KVN LT++QI+ I
Sbjct: 1   MSYILGTNLVPNEQVEIALTRIFGLGPKKAIQVCDQLGLNDNIKVNKLTKYQIDRI 56


>tr|B0BLG5|B0BLG5_CYCTA Ribosomal protein S13 OS=Cycas taitungensis
           GN=rps13 PE=4 SV=1
          Length = 150

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G + V N+Q+R+AST I GIGPKKAT +R  LG+SDN KVN  T++QI+ I
Sbjct: 1   MSYIPGARSVPNEQVRIASTKIDGIGPKKATRVRYRLGISDNIKVNESTKYQIDQI 56


>tr|Q5K5E1|Q5K5E1_9LILI Ribosomal protein S13 OS=Campynema lineare
           GN=rps13 PE=4 SV=1
          Length = 116

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 44/57 (77%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWIS 272
           +SYI G + V ++Q+R+AST I+GIGPKKA  +R  LG+S N K+N LT++QI+ IS
Sbjct: 1   MSYISGARSVPDEQVRIASTKIYGIGPKKAIQVRYRLGISGNIKMNELTKYQIDQIS 57


>tr|Q5K6M2|Q5K6M2_9ASPA RPS13 OS=Asphodelus sp. Quagliariello 16105
           PE=4 SV=1
          Length = 116

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = +3

Query: 108 YILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWIS 272
           YI G + V ++Q+R+AST I+GIGPKKA  +R  LG+S N K+N LT++QI+ IS
Sbjct: 3   YISGARSVPDEQVRIASTKIYGIGPKKAIQVRYRLGISGNIKMNELTKYQIDQIS 57


>tr|Q3LFF2|Q3LFF2_9ASPA Mitochondrial ribosomal protein RPS13
           OS=Xeronema callistemon GN=rps13 PE=4 SV=1
          Length = 116

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 30/57 (52%), Positives = 43/57 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWIS 272
           +SYI G + V ++Q+R+AST I+GIGPKKA  +R  LG+  N K+N LT++QI+ IS
Sbjct: 1   MSYISGARSVPDEQVRIASTKIYGIGPKKAIQVRYRLGIRGNIKMNELTKYQIDQIS 57


>tr|Q5K5E5|Q5K5E5_9ASPA Ribosomal protein S13 OS=Tecophilaea
           violiflora GN=rps13 PE=4 SV=1
          Length = 116

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 30/54 (55%), Positives = 42/54 (77%)
 Frame = +3

Query: 108 YILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           YILG +LV ++Q+R+AST + GIGPKKA  +R  LG+S N K+N LT++QI+ I
Sbjct: 3   YILGARLVPDEQVRIASTKMDGIGPKKAIQVRYRLGISGNIKMNELTKYQIDQI 56


>tr|Q5U6E3|Q5U6E3_BETVU Ribosomal protein S13 OS=Beta vulgaris
           subsp. vulgaris GN=rps13 PE=4 SV=1
          Length = 116

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G +LV +KQ+++AST I GIGPKKA  +   LG+SDN K+  LT++QI+ I
Sbjct: 1   MSYISGARLVDDKQVKIASTKIDGIGPKKAIQVCYRLGISDNIKIKELTKYQIDQI 56


>tr|Q34010|Q34010_BETVU Ribosomal protein S13 (Fragment) OS=Beta
           vulgaris subsp. vulgaris GN=rps13 PE=4 SV=1
          Length = 90

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G +LV +KQ+++AST I GIGPKKA  +   LG+SDN K+  LT++QI+ I
Sbjct: 1   MSYISGARLVDDKQVKIASTKIDGIGPKKAIQVCYRLGISDNIKIKELTKYQIDQI 56


>tr|Q9G2W3|Q9G2W3_MAGSO Ribosomal protein S13 OS=Magnolia
           soulangeana GN=rps13 PE=4 SV=1
          Length = 116

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQINWI 269
           +SYI G + V +KQ+R+AST + GIGPKKA  +R  LG+S N K+N LT++QI+ I
Sbjct: 1   MSYISGARSVPDKQVRIASTKMDGIGPKKAIQVRYRLGISGNIKMNELTKYQIDQI 56


>tr|Q8HQ63|Q8HQ63_9LILI Ribosomal protein S13 OS=Alstroemeria hybrid
           cultivar PE=4 SV=1
          Length = 116

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 29/54 (53%), Positives = 42/54 (77%)
 Frame = +3

Query: 102 VSYILGTKLVSNKQIRLAST*IFGIGPKKATWIRD*LGLSDNTKVNNLTRHQIN 263
           +SYI G +LV ++Q+R+AST + GIGPKKA  +R  LG+S N K+N LT++QI+
Sbjct: 1   MSYISGARLVPDEQVRIASTKMDGIGPKKAIQVRYRLGISGNIKMNELTKYQID 54