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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947546
Clone id YMU02A01NGRL0016_D21
Library
Length 755
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_D21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTTATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATAGCGAAGCAAGT
GGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACTATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CTAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGCGCTTTGACGCTGAGACGCAGGTGCA
GGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAAATT
ATGTTGGCATGAATGCCTGCTTTCCCATTCCCCACTGGGCGCCAAAAAAGCTTGGCTCTT
ATGAGCCTTTTTGGTGTCCCAGCCCACTTTTGGCCTTCCTTTAAGGGGAACCCACCCTTC
CCCCCGGGGGGTGGGCCTTTCTAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 171.0
E-value 5.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947546|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D21, 5'
         (728 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   171   5e-42
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   167   7e-41
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   167   7e-41
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   166   9e-41
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   165   2e-40
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   165   2e-40
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   164   3e-40
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   164   5e-40
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   164   5e-40
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   163   8e-40
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   163   8e-40
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   163   8e-40
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   163   8e-40
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   163   1e-39
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   162   2e-39
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   162   2e-39
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   162   2e-39
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   162   2e-39
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   162   2e-39
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   161   3e-39
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   161   4e-39
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   160   5e-39
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   160   7e-39
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   160   7e-39
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   160   7e-39
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   159   1e-38

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  171 bits (432), Expect = 5e-42
 Identities = 83/156 (53%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
           L+  F+GLK+   F    K+ N  +   S G RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ + G VYREH H  GYY GRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECA*EYPEAFIRVLRFDAETQVQVSGFLVQKP 568
           +E+ EC  EYP AFIRV+ FD   QVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  167 bits (422), Expect = 7e-41
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 4/157 (2%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 286
           L+  F+GLK++  F   K  N +    S GSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLR 463
           + K+V++++RKGW PC+EF+ + G V+R++    GYY GRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPSV 574
           E+AEC  EYPEAFIR++ FD   QVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  167 bits (422), Expect = 7e-41
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+ LK+T+ F    K+ N +    S G RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++RK   PC+EF+ + G VYREH    GYY GRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKP 568
           EC   YP AFIR++ FD + QVQ+  F+  KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  166 bits (421), Expect = 9e-41
 Identities = 79/148 (53%), Positives = 98/148 (66%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 304
           S +    T  FA  S  P   S G RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAECA* 484
           +++R GW PCIEF K+G VYRE+ +  GYY GRYW MWKLPMFGC D++ VL+E+ EC+ 
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLRFDAETQVQVSGFLVQKP 568
            YP+ F R++ FD   QVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  165 bits (418), Expect = 2e-40
 Identities = 81/156 (51%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
 Frame = +2

Query: 125 SFSGLKATTLFAP--KSPNPLA------ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSS 280
           +F+GLK+T  F    K  N  A       S G RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 281 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVL 460
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYY GRYWVMWKLPMFGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 461 REIAECA*EYPEAFIRVLRFDAETQVQVSGFLVQKP 568
            E+ ECA  YP+AFIRV+ FD   QVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  165 bits (418), Expect = 2e-40
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GL+++  F    K+ N L+   S G RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF K G VYRE+    GYY GRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
               YPE F+R++ FD + QVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  165 bits (418), Expect = 2e-40
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GL+++  F    K+ N L+   S G RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF K G VYRE+    GYY GRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
               YPE F+R++ FD + QVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  164 bits (416), Expect = 3e-40
 Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GLK++  F    K+ N +    S G RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ + G VYREH +  GYY GRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKP 568
           EC  EYP AFIR++ FD   QVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  164 bits (415), Expect = 5e-40
 Identities = 81/152 (53%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLAI-SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F+GLK+++ F    KS +  +I S G RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYY GRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 476 CA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
               YP++FIR++ FD   QVQ   F+  KP+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  164 bits (415), Expect = 5e-40
 Identities = 80/158 (50%), Positives = 101/158 (63%), Gaps = 5/158 (3%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAI----SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 292
           SF+GLK+   F       L I    S G RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 293 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREI 469
           K+++++++KGW PC+EF+ + G VYREH    GYY GRYW MWKLPMFGC DA  VL E+
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 470 AECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPSV*TF 583
            E    YP+A+IR++ FD   QVQ   F+  KP    F
Sbjct: 145 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 272.0
E-value 2.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947546|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_D21, 5'
         (728 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   272   2e-71
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   184   7e-45
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   173   9e-42
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   173   1e-41
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   173   1e-41
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   172   2e-41
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   172   2e-41
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   171   5e-41
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   171   5e-41
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   171   6e-41
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   171   6e-41
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   170   8e-41
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   170   1e-40
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   170   1e-40
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   169   2e-40
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   167   5e-40
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   167   5e-40
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   167   9e-40
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   166   1e-39
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   166   2e-39

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  272 bits (695), Expect = 2e-71
 Identities = 128/152 (84%), Positives = 140/152 (92%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           LSKSFSGLKA TLFAPK  NPLAIS GSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAE 475
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYY GRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           CA EYP AFIRVL FDA+ QVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  189 bits (481), Expect = 1e-46
 Identities = 91/153 (59%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTLFA K+    ++  GSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYY GRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC   +P  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF  KS    ++  GSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +G+V R +F G   SGYY GRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC   YP  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  186 bits (473), Expect = 1e-45
 Identities = 90/153 (58%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTL A K+    ++  GSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYY GRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC   +P  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  186 bits (472), Expect = 1e-45
 Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ K+    ++  GSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYY GRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC  ++P  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  186 bits (472), Expect = 1e-45
 Identities = 88/153 (57%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK  TLF+ K+    A+  GSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYY GRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC  ++P  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  184 bits (466), Expect = 7e-45
 Identities = 85/153 (55%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ ++    ++  GSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYYGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYY GRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECA*EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
           EC  ++P  ++RVL FD++ QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  176 bits (447), Expect = 1e-42
 Identities = 83/150 (55%), Positives = 104/150 (69%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ T+F+ K+ N  ++  GSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V R +    GYY GRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 *EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
             +P  F+RVL FD   QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  176 bits (446), Expect = 1e-42
 Identities = 84/150 (56%), Positives = 104/150 (69%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK++TLF+ K+ +  ++  GSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           D+M+++   PC+EFD    V R +    GYY GRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 *EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
             +P  F+RVL FD   QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  176 bits (446), Expect = 1e-42
 Identities = 84/150 (56%), Positives = 105/150 (70%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ +S    ++  GSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYYGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V RE+    GYY GRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 *EYPEAFIRVLRFDAETQVQVSGFLVQKPS 571
             +P  F+RVL FD   QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181