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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947554
Clone id YMU02A01NGRL0016_E08
Library
Length 396
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_E08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAACGCTGACCTGTGGAGCAAATGTCCCTGACTTTGTGATGATCTTTGTTCTGGAAGATT
GTTCTGCTTCTGGTGACTTCTATACAGCTTGTCCAACTGGATTGGCACTTGGGTTTTGTA
CCCTCGGCGCTCTCTTGTCGCGTGGCGCCCCTCCTCTTGCCGACACTCTTGCCCTTGCGC
ACTGTTGCTTTTGTATGTTAATGATAGTAAATCCTGATTTCTGTACTTTCACCCGTCTTC
CATGTCTCAGCTTTTGCCTTGTATATTCTGACAGTCATGAGAATGAAACAGTGTAGCTCC
CTGTGCCCTCCAAAATCTTTCTAGACCATTCATTTGGTGCGCGGGCCCTGTCGGCAAGTG
AACATCTTCATAATTGTTTTCTAGCATATCCTGGTC
■■Homology search results ■■ -
sp_hit_id Q40519
Definition sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum
Align length 55
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947554|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_E08, 5'
         (396 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    40   0.003
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    40   0.003
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    40   0.005
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    39   0.008
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    39   0.011
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    39   0.011
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    37   0.031
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavi...    33   0.34 
sp|Q9GKM0|PRM2_ERYPA Protamine-2 OS=Erythrocebus patas GN=PRM2 P...    31   1.7  
sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN...    30   2.9  
sp|A4IFA3|GT2D2_BOVIN General transcription factor II-I repeat d...    30   3.7  
sp|Q75E67|ELOA1_ASHGO Elongin-A OS=Ashbya gossypii GN=ELA1 PE=3 ...    30   3.7  
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus mus...    30   4.9  
sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2      30   4.9  
sp|Q5RCQ9|KLH23_PONAB Kelch-like protein 23 OS=Pongo abelii GN=K...    30   4.9  
sp|Q06031|GP63_CRIFA Leishmanolysin homolog OS=Crithidia fascicu...    29   6.4  
sp|Q9UKA4|AKA11_HUMAN A-kinase anchor protein 11 OS=Homo sapiens...    29   6.4  

>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 24/55 (43%), Positives = 32/55 (58%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  +D S SGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 81  GANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  ++ SASGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 86  GANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 24/55 (43%), Positives = 32/55 (58%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+   + SASGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 85  GANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  ++ S SGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 83  GANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALA 137


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  ++ S SGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 83  GANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 24/55 (43%), Positives = 29/55 (52%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ S SGD Y    TGL L   TL  +L  GA  +  T ALA
Sbjct: 83  GANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ + +GD Y    TGL +   TL  LL+ GA  + +T ALA
Sbjct: 85  GANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139


>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
            229E GN=rep PE=1 SV=1
          Length = 6758

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +3

Query: 36   VMIFVLEDCSASGDFY-----TACPTGLALGFCTLGALLSRGAPPLADTLALAHCCFCML 200
            V +  L++   +G+FY       CP G+ + +CT  +  S   P +  T  LA  CF   
Sbjct: 4264 VGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCT--SYYSYMMPVMGMTNCLASECFMKS 4321

Query: 201  MIVNPDFCTFTRL 239
             I   DF TF  L
Sbjct: 4322 DIFGQDFKTFDLL 4334


>sp|Q9GKM0|PRM2_ERYPA Protamine-2 OS=Erythrocebus patas GN=PRM2 PE=2
           SV=1
          Length = 103

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = -1

Query: 228 KYRNQDLLSLTYKSNSAQGQECRQEEGRHATRERRGYKTQVPIQLDKLYRSHQKQNNLPE 49
           +YR +   SL+ + +   GQ+   ++  H  +E +G     P  ++   R+HQ  ++   
Sbjct: 3   RYRTR---SLSERPHEVHGQQVHGQDQGHNGQEEQGLS---PEHVEVYERTHQGHSHHRR 56

Query: 48  QRSSQSQGHLLHR 10
           +R SQ + H +HR
Sbjct: 57  RRCSQRRLHRIHR 69


>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb
            PE=1 SV=3
          Length = 2146

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +3

Query: 51   LEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALAHCCFCMLMIV 209
            +E C A  D+Y  CP G A   CT         P   D   +      +L+++
Sbjct: 2045 VESCGAKPDYYCECPEGFAGKNCTAPITAKEDGPSTTDIAIIVIPVVVVLLLI 2097
tr_hit_id A8VIE2
Definition tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosopsis juliflora
Align length 55
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947554|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_E08, 5'
         (396 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    42   0.015
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    42   0.020
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    41   0.026
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    41   0.026
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    40   0.044
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    40   0.044
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.044
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    40   0.044
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    40   0.058
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    40   0.075
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    40   0.075
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    39   0.099
tr|B2BJH0|B2BJH0_OLEEU Photosystem II 10 kDa polypeptide (Fragme...    38   0.22 
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    38   0.22 
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    38   0.29 
tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    38   0.29 
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    38   0.29 
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    38   0.29 
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    38   0.29 
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    37   0.37 
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    37   0.37 
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    37   0.37 
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    37   0.49 
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.49 
tr|A9XNP5|A9XNP5_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    37   0.64 
tr|A9XNP4|A9XNP4_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    37   0.64 
tr|A9XNP2|A9XNP2_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    37   0.64 

>tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosopsis
           juliflora GN=PsbR PE=2 SV=1
          Length = 139

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           G NV  +  I+  ED S SGD Y    TGLA+   TL  LL+ GA  + +T ALA
Sbjct: 84  GTNVDGYSPIYNTEDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALA 138


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
           SV=1
          Length = 141

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ SASGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 86  GANVDGYSPIYNEEEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140


>tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide
           OS=Trifolium pratense PE=2 SV=1
          Length = 136

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  +D S +GD YT   TGLA+   TL  LL+ GA  + +T AL+
Sbjct: 81  GANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVYNTSALS 135


>tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide,
           chloroplast OS=Chenopodium rubrum GN=psII10 PE=2 SV=1
          Length = 121

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 25/55 (45%), Positives = 32/55 (58%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ S SGD YT   TGL +   TL  LL+ GA  + +T ALA
Sbjct: 66  GANVDGYSPIYNEEEWSPSGDVYTGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 120


>tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24892 PE=4 SV=1
          Length = 139

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ S SGD YT   TGL L   TL  +L  GA  + +T ALA
Sbjct: 84  GANVDGYSPIYNPEEWSPSGDLYTGGKTGLLLWAVTLSGILLAGALLVYNTSALA 138


>tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragment)
           OS=Brassica rapa subsp. pekinensis PE=2 SV=1
          Length = 137

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  ++ SASGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 82  GANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 136


>tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptide,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0022E03.16 PE=4 SV=1
          Length = 134

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ S SGD YT   TGL L   TL  +L  GA  + +T ALA
Sbjct: 79  GANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTLSGILLAGALLVYNTSALA 133


>tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022174 PE=4 SV=1
          Length = 251

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  E+ S SGD YT   TGL L   TL  +L  GA  + +T ALA
Sbjct: 196 GANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTLSGILLAGALLVYNTSALA 250


>tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide
           OS=Brassica campestris PE=2 SV=1
          Length = 140

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  ++ SASGD Y    TGLA+   TL  +L+ GA  + +T ALA
Sbjct: 85  GANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139


>tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein
           (Fragment) OS=Arachis hypogaea PE=2 SV=1
          Length = 129

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  GANVPDFVMIFVLEDCSASGDFYTACPTGLALGFCTLGALLSRGAPPLADTLALA 179
           GANV  +  I+  +D S +GD YT   TGLA+   TL  LL+ GA  + +T AL+
Sbjct: 74  GANVDGYSPIYDQKDWSPTGDVYTGGTTGLAIWAVTLVGLLAGGALLVYNTSALS 128