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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947555
Clone id YMU02A01NGRL0016_E09
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_E09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACAGCGTTGGCTCACATTCGCAACAACCGAGTTGCCATGGACAAAATTGTGGAGGTTTTG
TTAGAGAAGGAGACAATGAGTGGGGATGAGTTCAGAGCCATTCTCTCGGAGTTCACTGAA
ATTCCTGCCCAGAATAGAATGCCTTCATCTGCACCACAGCCTGTCGCAGCTTAAATGAGA
TGTGAGATGCCCTTGTACATTTCTTGTCCATTGTGAAGATCATTACGTGGATTGGATGTA
ATCTTTTTGTCAGCATATGCACTGTAATATTCTAAGTACTTGTGATGAAGTGGGAAGCTT
TGTAGTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O80860
Definition sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana
Align length 62
Score (bit) 85.1
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947555|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_E09, 5'
         (308 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2, chl...    85   1e-16
sp|Q655S1|FTSH2_ORYSJ Cell division protease ftsH homolog 2, chl...    84   3e-16
sp|Q8W585|FTSH8_ARATH Cell division protease ftsH homolog 8, chl...    82   6e-16
sp|Q1PDW5|FTSH6_ARATH Cell division protease ftsH homolog 6, chl...    64   2e-10
sp|Q67WJ2|FTSH6_ORYSJ Cell division protease ftsH homolog 6, chl...    62   9e-10
sp|P51327|FTSH_PORPU Cell division protease ftsH homolog OS=Porp...    53   5e-07
sp|O78516|FTSH_GUITH Cell division protease ftsH homolog OS=Guil...    52   7e-07
sp|P49825|FTSH_ODOSI Cell division protease ftsH homolog OS=Odon...    51   2e-06
sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog OS=Porp...    50   5e-06
sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1 OS=S...    46   5e-05
sp|Q9TJ83|FTSH_CYAME Cell division protease ftsH homolog OS=Cyan...    44   2e-04
sp|P73437|FTSH3_SYNY3 Cell division protease ftsH homolog 3 OS=S...    32   1.3  
sp|P72991|FTSH4_SYNY3 Cell division protease ftsH homolog 4 OS=S...    30   2.9  
sp|A6USA0|RRMJ_METVS Ribosomal RNA large subunit methyltransfera...    30   3.8  
sp|Q8ES84|PCRB_OCEIH Putative glycerol-1-phosphate prenyltransfe...    29   8.4  
sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus GN=...    29   8.4  

>sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
          Length = 695

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 44/62 (70%), Positives = 50/62 (80%), Gaps = 7/62 (11%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPS-------SAPQP 162
           AL+HI+NNR AMDK+VEVLLEKET+ GDEFRAILSEFTEIP +NR+PS       SAP P
Sbjct: 633 ALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENRVPSSTTTTPASAPTP 692

Query: 163 VA 168
            A
Sbjct: 693 AA 694


>sp|Q655S1|FTSH2_ORYSJ Cell division protease ftsH homolog 2,
           chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2
           PE=3 SV=1
          Length = 676

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVAA 171
           AL+ IR+NR AMDKIVEVLLEKET+SGDEFRAILSEFTEIP +NR+P + P  + A
Sbjct: 621 ALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 676


>sp|Q8W585|FTSH8_ARATH Cell division protease ftsH homolog 8,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
          Length = 685

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSS 150
           AL+ IRNNR AMDKIVE+LLEKETMSGDEFRAILSEFTEIP +NR+ SS
Sbjct: 626 ALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRVASS 674


>sp|Q1PDW5|FTSH6_ARATH Cell division protease ftsH homolog 6,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1
          Length = 688

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIP 126
           A  H+RNNR A+DK+V+VLLEKET++GDEFRAILSE+T+ P
Sbjct: 631 AKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671


>sp|Q67WJ2|FTSH6_ORYSJ Cell division protease ftsH homolog 6,
           chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6
           PE=3 SV=1
          Length = 686

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 29/55 (52%), Positives = 41/55 (74%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVA 168
           A AH+R NR A+D++V+VL+EKET+ GDEFRAILSE  +I  + R  ++  Q +A
Sbjct: 630 AKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERRETAARTQQLA 684


>sp|P51327|FTSH_PORPU Cell division protease ftsH homolog
           OS=Porphyra purpurea GN=ftsH PE=3 SV=1
          Length = 628

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 34/40 (85%)
 Frame = +1

Query: 16  IRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQN 135
           +++NRV MD++V++L+EKET+ G+EFR I+ E+T IP +N
Sbjct: 583 VKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAIPEKN 622


>sp|O78516|FTSH_GUITH Cell division protease ftsH homolog
           OS=Guillardia theta GN=ftsH PE=3 SV=1
          Length = 631

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 21/37 (56%), Positives = 32/37 (86%)
 Frame = +1

Query: 16  IRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIP 126
           I++NRV +DK+V++L+EKET+ GDEFR I+ +FT +P
Sbjct: 583 IKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSLP 619


>sp|P49825|FTSH_ODOSI Cell division protease ftsH homolog
           OS=Odontella sinensis GN=ftsH PE=3 SV=1
          Length = 644

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQN 135
           A+  + +NRV +D IVE LL+KETM GDEFR +LS +T +P +N
Sbjct: 593 AIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYTILPNKN 636


>sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog
           OS=Porphyra yezoensis GN=ftsH PE=3 SV=1
          Length = 628

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 21/40 (52%), Positives = 33/40 (82%)
 Frame = +1

Query: 16  IRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQN 135
           I +NRV +D++V++L+EKET+ G+EFR I+ E+T IP +N
Sbjct: 583 IIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAIPEKN 622


>sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1
           OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3
           SV=1
          Length = 627

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 16/42 (38%), Positives = 33/42 (78%)
 Frame = +1

Query: 16  IRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRM 141
           ++  R  +D++V++L+EKET+ G+EFR I++E+ E+P + ++
Sbjct: 582 VQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQL 623
tr_hit_id A7PJL7
Definition tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 91.7
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947555|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_E09, 5'
         (308 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genom...    92   2e-17
tr|A5AER7|A5AER7_VITVI Putative uncharacterized protein OS=Vitis...    92   2e-17
tr|Q2PEV7|Q2PEV7_TRIPR Putative zinc dependent protease OS=Trifo...    85   2e-15
tr|A9STZ2|A9STZ2_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|O99018|O99018_CAPAN Chloroplast protease OS=Capsicum annuum G...    84   4e-15
tr|Q9ZP50|Q9ZP50_TOBAC FtsH-like protein Pftf OS=Nicotiana tabac...    84   5e-15
tr|Q0DA88|Q0DA88_ORYSJ Os06g0669400 protein (Fragment) OS=Oryza ...    84   5e-15
tr|A6MZA7|A6MZA7_ORYSI Cell division protein ftsh (Fragment) OS=...    84   5e-15
tr|A2YG12|A2YG12_ORYSI Putative uncharacterized protein OS=Oryza...    84   5e-15
tr|Q9LMH8|Q9LMH8_ARATH T2D23.13 protein OS=Arabidopsis thaliana ...    82   1e-14
tr|B1P2H3|B1P2H3_MAIZE Filamentation temperature-sensitive H 2A ...    82   2e-14
tr|B6T8X2|B6T8X2_MAIZE FtsH6-Zea mays FtsH protease OS=Zea mays ...    81   2e-14
tr|B1P2H4|B1P2H4_MAIZE Filamentation temperature-sensitive H 2B ...    81   2e-14
tr|Q2PEX6|Q2PEX6_TRIPR Putative zinc dependent protease OS=Trifo...    80   5e-14
tr|A9T7H1|A9T7H1_PHYPA Predicted protein OS=Physcomitrella paten...    77   4e-13
tr|A9NQE3|A9NQE3_PICSI Putative uncharacterized protein OS=Picea...    77   6e-13
tr|Q4W5U8|Q4W5U8_SOLLC FtsH protease OS=Solanum lycopersicum GN=...    69   2e-10
tr|A7PMU5|A7PMU5_VITVI Chromosome chr14 scaffold_21, whole genom...    67   4e-10
tr|A5AIR5|A5AIR5_VITVI Putative uncharacterized protein OS=Vitis...    67   4e-10
tr|A0EXV4|A0EXV4_9FABA Putative FtsH protease (Fragment) OS=Ammo...    67   4e-10
tr|A8J6C7|A8J6C7_CHLRE Membrane AAA-metalloprotease OS=Chlamydom...    63   8e-09
tr|Q0DDE7|Q0DDE7_ORYSJ Os06g0229000 protein (Fragment) OS=Oryza ...    62   1e-08
tr|B8B492|B8B492_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A2BQM9|A2BQM9_PROMS FtsH ATP-dependent protease-like protein ...    58   2e-07
tr|A2Q1U2|A2Q1U2_MEDTR Peptidase M41 OS=Medicago truncatula GN=M...    58   2e-07
tr|Q10ZF7|Q10ZF7_TRIEI FtsH peptidase homologue, chloroplast. Me...    57   4e-07
tr|B6SVK3|B6SVK3_MAIZE FtsH6-Zea mays FtsH protease OS=Zea mays ...    57   4e-07
tr|B4F988|B4F988_MAIZE Putative uncharacterized protein OS=Zea m...    57   4e-07
tr|Q3AY02|Q3AY02_SYNS9 FtsH peptidase homologue, chloroplast. Me...    57   5e-07
tr|Q067G5|Q067G5_9SYNE Peptidase M41, FtsH OS=Synechococcus sp. ...    57   5e-07

>tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018790001
           PE=4 SV=1
          Length = 695

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPV 165
           AL HIRNNR A+DKIVEVLLEKETM+GDEFRAILSEF EIPA+NR+P+S P PV
Sbjct: 640 ALTHIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPASVPSPV 693


>tr|A5AER7|A5AER7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000418 PE=4 SV=1
          Length = 694

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPV 165
           AL HIRNNR A+DKIVEVLLEKETM+GDEFRAILSEF EIPA+NR+P+S P PV
Sbjct: 639 ALTHIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPASVPSPV 692


>tr|Q2PEV7|Q2PEV7_TRIPR Putative zinc dependent protease
           OS=Trifolium pratense PE=2 SV=1
          Length = 702

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 41/54 (75%), Positives = 47/54 (87%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPV 165
           AL  IRNNR A+DKIVEVLLEKET+SGDEFRA+LSEFTEIP +NR+P + P PV
Sbjct: 647 ALEQIRNNREAIDKIVEVLLEKETLSGDEFRALLSEFTEIPVENRVPPATPLPV 700


>tr|A9STZ2|A9STZ2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_135234 PE=4 SV=1
          Length = 635

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVA 168
           AL HIRNNR AMDKIVEVLLEKET+SG EFRAILSE+TEIPA+NR+  +   PVA
Sbjct: 580 ALGHIRNNRTAMDKIVEVLLEKETLSGAEFRAILSEYTEIPAENRVSDNQAAPVA 634


>tr|O99018|O99018_CAPAN Chloroplast protease OS=Capsicum annuum
           GN=cacp PE=2 SV=1
          Length = 693

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 40/55 (72%), Positives = 49/55 (89%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVA 168
           AL+ IR+NR A+DKIVEVLLE+ETM+GDEFRAILSEF EIPA+NR+P++ P P A
Sbjct: 638 ALSQIRSNREAIDKIVEVLLEQETMTGDEFRAILSEFVEIPAENRVPAAVPTPAA 692


>tr|Q9ZP50|Q9ZP50_TOBAC FtsH-like protein Pftf OS=Nicotiana tabacum
           GN=Pftf PE=2 SV=1
          Length = 693

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQP 162
           AL HIRNNR A+DKIVEVLLEKETM+GDEFRAILSEF EIPA+NR+    P P
Sbjct: 638 ALTHIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVAPVVPTP 690


>tr|Q0DA88|Q0DA88_ORYSJ Os06g0669400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0669400 PE=4 SV=1
          Length = 609

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVAA 171
           AL+ IR+NR AMDKIVEVLLEKET+SGDEFRAILSEFTEIP +NR+P + P  + A
Sbjct: 554 ALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 609


>tr|A6MZA7|A6MZA7_ORYSI Cell division protein ftsh (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 177

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVAA 171
           AL+ IR+NR AMDKIVEVLLEKET+SGDEFRAILSEFTEIP +NR+P + P  + A
Sbjct: 122 ALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 177


>tr|A2YG12|A2YG12_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24055 PE=4 SV=1
          Length = 676

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSSAPQPVAA 171
           AL+ IR+NR AMDKIVEVLLEKET+SGDEFRAILSEFTEIP +NR+P + P  + A
Sbjct: 621 ALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 676


>tr|Q9LMH8|Q9LMH8_ARATH T2D23.13 protein OS=Arabidopsis thaliana
           GN=T2D23.13 PE=4 SV=1
          Length = 88

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +1

Query: 4   ALAHIRNNRVAMDKIVEVLLEKETMSGDEFRAILSEFTEIPAQNRMPSS 150
           AL+ IRNNR AMDKIVE+LLEKETMSGDEFRAILSEFTEIP +NR+ SS
Sbjct: 29  ALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRVASS 77