DK947558 |
Clone id |
YMU02A01NGRL0016_E14 |
Library |
YMU02 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_E14. 5' end sequence. |
Accession |
DK947558 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL6Contig1 |
Sequence |
GAGCCAGCCGAACGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAA GAAGAAGCCATGGCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCC CCCGCTGCTTCTCTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTC TCTCCTAAGCTATCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCG ACCAAAACTCCCTTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGACGCCTCT GGTCGCAAAGCTAAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTC GATGCATACAGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCT GCAGGTCCTACTGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGT GCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAG GTGAATCCTGAATTCTGACACACTATGCGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
135.0 |
E-value |
2.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947558|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0016_E14, 5' (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 135 2e-31 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 134 4e-31 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 132 9e-31 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 130 4e-30 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 130 5e-30 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 126 7e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 125 2e-28 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 32 1.7 sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=... 28 1.8 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 31 3.8 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 31 3.8 sp|O08550|MLL4_MOUSE Histone-lysine N-methyltransferase MLL4 OS=... 27 4.9 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 8.5 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 8.5
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 135 bits (339), Expect = 2e-31 Identities = 69/121 (57%), Positives = 81/121 (66%) Frame = +1
Query: 154 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 333 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 334 YTKKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 513 Y KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 514 Q 516 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 134 bits (336), Expect = 4e-31 Identities = 69/119 (57%), Positives = 80/119 (67%) Frame = +1
Query: 160 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 339 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 340 KKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 516 KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 132 bits (333), Expect = 9e-31 Identities = 67/119 (56%), Positives = 81/119 (68%) Frame = +1
Query: 160 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 339 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 340 KKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 516 KYGANVD YSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 130 bits (328), Expect = 4e-30 Identities = 68/121 (56%), Positives = 79/121 (65%) Frame = +1
Query: 154 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 333 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 334 YTKKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 513 + KYGANVD YSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 514 Q 516 Q Sbjct: 141 Q 141
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 130 bits (327), Expect = 5e-30 Identities = 68/119 (57%), Positives = 78/119 (65%) Frame = +1
Query: 160 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 339 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 340 KKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 516 KYGANVD YSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 126 bits (317), Expect = 7e-29 Identities = 67/118 (56%), Positives = 76/118 (64%) Frame = +1
Query: 163 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 342 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 343 KYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 516 KYGANVD YSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 125 bits (313), Expect = 2e-28 Identities = 68/126 (53%), Positives = 76/126 (60%) Frame = +1
Query: 136 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 315 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 316 GKGVYQYTKKYGANVDAYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 495 GKGVYQ+ KYGANVD YSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 496 NTSALA 513 +TSALA Sbjct: 132 STSALA 137
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 32.3 bits (72), Expect = 1.7 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1
Query: 154 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 315 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 316 GKGVYQYTKKYGANVDAYSPIYVPEEW 396 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=Homo sapiens GN=WBP7 PE=1 SV=1 Length = 2715
Score = 27.7 bits (60), Expect(2) = 1.8 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3
Query: 168 HPLPLS*AIRPLPQNRGKWC 227 HP L A RPLPQ+ WC Sbjct: 1226 HPFCLEEAERPLPQHHDTWC 1245
Score = 21.9 bits (45), Expect(2) = 1.8 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = +3
Query: 327 LPIYQEVWC*CRCIQPYLCPR 389 LP + + WC RC ++C R Sbjct: 1237 LPQHHDTWCCRRCKFCHVCGR 1257
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 31.2 bits (69), Expect = 3.8 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1
Query: 334 YTKKYGANVDAYSPIYVPEEWSTSGDSYAAGP 429 Y +G N DAY Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
129 |
Score (bit) |
141.0 |
E-value |
2.0e-32 |
Report |
|