NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947584
Clone id YMU02A01NGRL0016_F24
Library
Length 309
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_F24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAATTCATGCAAATAGAGTTACTATTATGCCAAAAGACATTCAGCTTGCTTGGCGTATCC
TTGGTGAACGTGCGTATGAGTGGAAGTCATTGATATGATTTGTGTAGGTGGGATTCTGAT
ATGGACATATTGATACTCGAGGTAGTTTTGGAGTACCCACTCATTGATCTGATTTGCTCT
CCTTTCCTTTTGATGTCAAGGCTGCAATGTGTTTAGGCCCTTGGTCTATGTACTTATCTC
CTTACATTGGTGATTTCTATGACGTTCTTTTAACACCTCTGTAATTTATCTCAAGTTTGA
CAAGCGATC
■■Homology search results ■■ -
sp_hit_id P08437
Definition sp|P08437|H3_VOLCA Histone H3 OS=Volvox carteri
Align length 24
Score (bit) 42.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947584|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_F24, 5'
         (309 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08437|H3_VOLCA Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2      42   7e-04
sp|P84239|H3_URECA Histone H3 OS=Urechis caupo PE=3 SV=2               42   7e-04
sp|P84237|H3_TIGCA Histone H3 OS=Tigriopus californicus PE=3 SV=2      42   7e-04
sp|P06352|H3_STRPU Histone H3, embryonic OS=Strongylocentrotus p...    42   7e-04
sp|P69079|H3_STRDR Histone H3, embryonic OS=Strongylocentrotus d...    42   7e-04
sp|P69078|H3_SOLST Histone H3, embryonic OS=Solaster stimpsoni P...    42   7e-04
sp|P69077|H3_PYCHE Histone H3, embryonic OS=Pycnopodia heliantho...    42   7e-04
sp|P69076|H3_PSAMI Histone H3, embryonic OS=Psammechinus miliari...    42   7e-04
sp|P84235|H3_PLADU Histone H3 OS=Platynereis dumerilii PE=3 SV=2       42   7e-04
sp|P69075|H3_PISOC Histone H3, embryonic OS=Pisaster ochraceus P...    42   7e-04
sp|P69074|H3_PISBR Histone H3, embryonic OS=Pisaster brevispinus...    42   7e-04
sp|P69073|H3_PARLI Histone H3, embryonic OS=Paracentrotus lividu...    42   7e-04
sp|Q9U7D1|H3_MASBA Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1      42   7e-04
sp|P69072|H3_LYTPI Histone H3, embryonic OS=Lytechinus pictus PE...    42   7e-04
sp|P02299|H3_DROME Histone H3 OS=Drosophila melanogaster GN=His3...    42   7e-04
sp|P84236|H3_DROHY Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2    42   7e-04
sp|P69071|H3_DERIM Histone H3, embryonic OS=Dermasterias imbrica...    42   7e-04
sp|P84238|H3_CHITH Histone H3 OS=Chironomus thummi thummi PE=3 SV=2    42   7e-04
sp|P08898|H3_CAEEL Histone H3 OS=Caenorhabditis elegans GN=his-2...    42   7e-04
sp|P22843|H3_ACRFO Histone H3 OS=Acropora formosa PE=3 SV=2            42   7e-04
sp|P02302|H3L_XENLA Histone H3-like OS=Xenopus laevis PE=1 SV=2        42   7e-04
sp|Q6NXT2|H3L_HUMAN Histone H3-like OS=Homo sapiens PE=2 SV=3          42   7e-04
sp|Q6P823|H33_XENTR Histone H3.3 OS=Xenopus tropicalis GN=TGas11...    42   7e-04
sp|Q6PI79|H33_XENLA Histone H3.3 OS=Xenopus laevis PE=1 SV=3           42   7e-04
sp|Q71H73|H33_VITVI Histone H3.3 OS=Vitis vinifera PE=2 SV=3           42   7e-04
sp|Q8WSF1|H33_TRIPS Histone H3.3 OS=Trichinella pseudospiralis G...    42   7e-04
sp|Q76N23|H33_TOBAC Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1...    42   7e-04
sp|P84248|H33_SPISO Histone H3.3 OS=Spisula solidissima PE=1 SV=2      42   7e-04
sp|P84245|H33_RAT Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=...    42   7e-04
sp|P84246|H33_RABIT Histone H3.3 OS=Oryctolagus cuniculus GN=H3F...    42   7e-04

>sp|P08437|H3_VOLCA Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2
          Length = 135

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 112 IHAKRVTIMPKDIQLARRIRGERA 135


>sp|P84239|H3_URECA Histone H3 OS=Urechis caupo PE=3 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P84237|H3_TIGCA Histone H3 OS=Tigriopus californicus PE=3 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P06352|H3_STRPU Histone H3, embryonic OS=Strongylocentrotus
           purpuratus PE=2 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P69079|H3_STRDR Histone H3, embryonic OS=Strongylocentrotus
           droebachiensis PE=2 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P69078|H3_SOLST Histone H3, embryonic OS=Solaster stimpsoni PE=2
           SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P69077|H3_PYCHE Histone H3, embryonic OS=Pycnopodia
           helianthoides PE=2 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P69076|H3_PSAMI Histone H3, embryonic OS=Psammechinus miliaris
           PE=2 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P84235|H3_PLADU Histone H3 OS=Platynereis dumerilii PE=3 SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>sp|P69075|H3_PISOC Histone H3, embryonic OS=Pisaster ochraceus PE=2
           SV=2
          Length = 136

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136
tr_hit_id A7T8N3
Definition tr|A7T8N3|A7T8N3_NEMVE Histone H3 OS=Nematostella vectensis
Align length 31
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947584|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_F24, 5'
         (309 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7T8N3|A7T8N3_NEMVE Histone H3 OS=Nematostella vectensis GN=v...    45   0.001
tr|A7S708|A7S708_NEMVE Predicted protein OS=Nematostella vectens...    45   0.002
tr|Q98TL3|Q98TL3_PLAFE Histone H3 (Fragment) OS=Platichthys fles...    42   0.012
tr|Q92135|Q92135_XENLA Histone H3 (Fragment) OS=Xenopus laevis P...    42   0.012
tr|Q92134|Q92134_XENLA Histone H3 OS=Xenopus laevis PE=3 SV=2          42   0.012
tr|Q92133|Q92133_XENLA Histone H3 OS=Xenopus laevis GN=hist1h3g ...    42   0.012
tr|Q92132|Q92132_XENLA Histone H3 OS=Xenopus laevis GN=H3r PE=3 ...    42   0.012
tr|Q92068|Q92068_CHICK Histone H3 OS=Gallus gallus PE=3 SV=1           42   0.012
tr|Q66VG2|Q66VG2_GECJA Histone H3 OS=Gecko japonicus PE=2 SV=1         42   0.012
tr|Q4THQ6|Q4THQ6_TETNG Histone H3 (Fragment) OS=Tetraodon nigrov...    42   0.012
tr|Q4SKP1|Q4SKP1_TETNG Histone H3 OS=Tetraodon nigroviridis GN=G...    42   0.012
tr|Q4S9G0|Q4S9G0_TETNG Histone H3 OS=Tetraodon nigroviridis GN=G...    42   0.012
tr|Q4S4R3|Q4S4R3_TETNG Histone H3 OS=Tetraodon nigroviridis GN=G...    42   0.012
tr|Q4QRF5|Q4QRF5_DANRE Histone H3 OS=Danio rerio GN=zgc:113983 P...    42   0.012
tr|Q28FA2|Q28FA2_XENTR Histone H3 OS=Xenopus tropicalis GN=TEgg0...    42   0.012
tr|B5XDS3|B5XDS3_SALSA Histone H3.3 OS=Salmo salar GN=H33 PE=2 SV=1    42   0.012
tr|B5X5C8|B5X5C8_SALSA Histone H3.3 OS=Salmo salar GN=H33 PE=2 SV=1    42   0.012
tr|B5G4Q1|B5G4Q1_TAEGU Putative H3 histone family 3B variant 1 O...    42   0.012
tr|B5FZ57|B5FZ57_TAEGU Putative H3 histone family 3A OS=Taeniopy...    42   0.012
tr|B5FZ56|B5FZ56_TAEGU Putative H3 histone family 3A OS=Taeniopy...    42   0.012
tr|B5DG71|B5DG71_SALSA H3 histone family 3A OS=Salmo salar GN=h3...    42   0.012
tr|B1H2B4|B1H2B4_XENTR Histone H3 OS=Xenopus tropicalis GN=hist2...    42   0.012
tr|A9ULQ0|A9ULQ0_XENTR Putative uncharacterized protein OS=Xenop...    42   0.012
tr|A9JTR4|A9JTR4_XENTR Histone H3 OS=Xenopus tropicalis GN=h3f3b...    42   0.012
tr|A8KBJ5|A8KBJ5_DANRE Histone H3 OS=Danio rerio GN=zgc:173552 P...    42   0.012
tr|A2VD45|A2VD45_DANRE Histone H3 OS=Danio rerio GN=zgc:113984 P...    42   0.012
tr|A2VD42|A2VD42_DANRE Histone H3 OS=Danio rerio GN=si:dkeyp-46h...    42   0.012
tr|B0BMY8|B0BMY8_RAT H3f3b protein OS=Rattus norvegicus GN=H3f3b...    42   0.012
tr|A2A852|A2A852_MOUSE Histone H3 OS=Mus musculus GN=H3f3a PE=3 ...    42   0.012
tr|A1L0V4|A1L0V4_MOUSE Histone H3 (Fragment) OS=Mus musculus GN=...    42   0.012

>tr|A7T8N3|A7T8N3_NEMVE Histone H3 OS=Nematostella vectensis
           GN=v1g231526 PE=3 SV=1
          Length = 148

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERAYEWKSLI 95
           IHA RVTIMPKDIQLA RI GERA+ WK+ I
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERAH-WKANI 142


>tr|A7S708|A7S708_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g229551 PE=4 SV=1
          Length = 220

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERAYE 80
           IHA RVTIMPKDIQLA RI GERA+E
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERAHE 138


>tr|Q98TL3|Q98TL3_PLAFE Histone H3 (Fragment) OS=Platichthys flesus
           GN=h3.3 PE=2 SV=2
          Length = 96

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 73  IHAKRVTIMPKDIQLARRIRGERA 96


>tr|Q92135|Q92135_XENLA Histone H3 (Fragment) OS=Xenopus laevis PE=3
           SV=1
          Length = 78

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 55  IHAKRVTIMPKDIQLARRIRGERA 78


>tr|Q92134|Q92134_XENLA Histone H3 OS=Xenopus laevis PE=3 SV=2
          Length = 76

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 53  IHAKRVTIMPKDIQLARRIRGERA 76


>tr|Q92133|Q92133_XENLA Histone H3 OS=Xenopus laevis GN=hist1h3g
           PE=3 SV=1
          Length = 136

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>tr|Q92132|Q92132_XENLA Histone H3 OS=Xenopus laevis GN=H3r PE=3
           SV=1
          Length = 136

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>tr|Q92068|Q92068_CHICK Histone H3 OS=Gallus gallus PE=3 SV=1
          Length = 136

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>tr|Q66VG2|Q66VG2_GECJA Histone H3 OS=Gecko japonicus PE=2 SV=1
          Length = 136

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 113 IHAKRVTIMPKDIQLARRIRGERA 136


>tr|Q4THQ6|Q4THQ6_TETNG Histone H3 (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00000188001 PE=3 SV=1
          Length = 122

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   IHANRVTIMPKDIQLAWRILGERA 74
           IHA RVTIMPKDIQLA RI GERA
Sbjct: 99  IHAKRVTIMPKDIQLARRIRGERA 122