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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947589
Clone id YMU02A01NGRL0016_G06
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_G06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTAATGGCAGCCGTGTGAGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGT
GCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTC
TGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCC
CACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGCATACAT
AATGAAACAACTTCCCAGTGGTGGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P08474
Definition sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus
Align length 35
Score (bit) 46.6
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947589|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G06, 5'
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    47   5e-05
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    46   6e-05
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    46   8e-05
sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    45   2e-04
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    45   2e-04
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    45   2e-04
sp|Q9XGX4|RBS3_AMAHP Ribulose bisphosphate carboxylase small cha...    44   2e-04
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    44   3e-04
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    44   3e-04
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    44   3e-04
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    44   4e-04
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    44   4e-04
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...    44   4e-04
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai...    43   5e-04
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    43   5e-04
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai...    43   7e-04
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    42   0.001

>sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1
          Length = 189

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*TFL 316
           KEYP+AFIRV+GFD  RQVQ   F+  KP V  FL
Sbjct: 151 KEYPDAFIRVIGFDNVRQVQCISFIAYKPQVLLFL 185


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           +P  + N      KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 136 DPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +2

Query: 185 ISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           + N  R  AK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 133 VINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small chain
           1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1
           PE=2 SV=1
          Length = 183

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           +P  + N    + K YP AFIR++GFD KRQVQ   F+  KP+
Sbjct: 138 DPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPA 180


>sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2
           PE=2 SV=1
          Length = 184

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           +P  + N    + K YP AFIR++GFD KRQVQ   F+  KP+
Sbjct: 139 DPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKPA 181


>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
           SV=1
          Length = 179

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
           SV=1
          Length = 179

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
           SV=1
          Length = 179

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|Q9XGX4|RBS3_AMAHP Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3
           PE=2 SV=1
          Length = 180

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           +P  + N    + K YP AFIR++GFD KRQVQ   F+  KP
Sbjct: 136 DPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 151 KAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 31
Score (bit) 60.1
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947589|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G06, 5'
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    60   5e-08
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    59   9e-08
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    58   2e-07
tr|A3F6J6|A3F6J6_CUCSA Ribulose bisphosphate carboxylase small c...    47   6e-04
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    46   8e-04
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...    46   0.001
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    45   0.001
tr|Q41940|Q41940_ARATH Ribulose bisphosphate carboxylase small c...    45   0.002
tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small c...    44   0.004
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.004
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    44   0.004
tr|B8LPE7|B8LPE7_PICSI Putative uncharacterized protein OS=Picea...    44   0.004
tr|B8LN69|B8LN69_PICSI Putative uncharacterized protein OS=Picea...    44   0.004
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A7YVW6|A7YVW6_ACTCH Ribulose bisphosphate carboxylase small c...    44   0.004
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...    44   0.004
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.005
tr|Q6LBP1|Q6LBP1_LARLA Ribulose bisphosphate carboxylase small c...    44   0.005
tr|Q6LBP0|Q6LBP0_LARLA Ribulose bisphosphate carboxylase small c...    44   0.005
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    44   0.005
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.005
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.005

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 209 AKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           AKEYP AFIRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 12  AKEYPSAFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 209 AKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           AKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 143 AKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173



 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSA 211
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SA
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISA 53


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 209 AKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           AKEYP AFIRVLGFDAKRQVQV+GFLV+KP
Sbjct: 5   AKEYPNAFIRVLGFDAKRQVQVAGFLVKKP 34


>tr|A3F6J6|A3F6J6_CUCSA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Cucumis sativus GN=rbcS PE=2 SV=1
          Length = 93

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*TFL 316
           KEYP+AFIRV+GFD  RQVQ   F+  KP V  FL
Sbjct: 55  KEYPDAFIRVIGFDNVRQVQCISFIAYKPQVLLFL 89


>tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small
           chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1
          Length = 180

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           +P  + N      KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 136 DPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus
           musculus PE=2 SV=1
          Length = 180

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 173 NPLAISNGSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           +P  + N      K YP+AF+R++GFD KRQVQ   F+  KPS
Sbjct: 136 DPAQVVNEVEEVKKAYPDAFVRIIGFDNKRQVQCISFIAYKPS 178


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 212 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 149 KEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|Q41940|Q41940_ARATH Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
          Length = 40

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 194 GSRVSAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           GS    KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 1   GSEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 35


>tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pinus pinaster PE=2 SV=1
          Length = 148

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +2

Query: 209 AKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 298
           AK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 119 AKAYPKAFIRVIGFDNVRQVQCISFIVHKP 148


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 218 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 301
           YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 157 YPSCWVRVLGFDSKKQVQICGFLVARPN 184



 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAKE 217
           K+FSGLK+ TLF  KS    ++ NGSRV   +
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQ 63