NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947599
Clone id YMU02A01NGRL0016_G18
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_G18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGGAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATGGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947599|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G18, 5'
         (464 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   2.3  
sp|Q5GF70|MATK_IRIOR Maturase K OS=Iris orientalis GN=matK PE=3 ...    31   2.3  
sp|Q4H1A5|MATK_GLAPA Maturase K OS=Gladiolus papilio GN=matK PE=...    31   3.0  
sp|Q4H186|MATK_PILTE Maturase K OS=Pillansia templemannii GN=mat...    30   5.1  
sp|Q4H195|MATK_LAPNE Maturase K OS=Lapeirousia neglecta GN=matK ...    30   5.1  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   5.1  
sp|Q4H192|MATK_MICJU Maturase K OS=Micranthus juncus GN=matK PE=...    30   6.7  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +1

Query: 247 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 393
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|Q5GF70|MATK_IRIOR Maturase K OS=Iris orientalis GN=matK PE=3
           SV=1
          Length = 522

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +3

Query: 48  VILIVEGSYLG*INWKKKLYLRRKYVFSYYFSKIRGRLINLVTHSFQELGKMVTKQNCFG 227
           VIL  +G++L    WK       +Y F +++   R  +  L  HSF  LG + +      
Sbjct: 299 VILASKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSNHSFYFLGYLSSLPRNSS 358

Query: 228 TPRNTWFNFYFRGDK*RKK 284
           T RN      F  D   KK
Sbjct: 359 TVRNQMLENSFIIDTVTKK 377


>sp|Q4H1A5|MATK_GLAPA Maturase K OS=Gladiolus papilio GN=matK PE=3
           SV=1
          Length = 522

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 51  ILIVEGSYLG*INWKKKLYLRRKYVFSYYFSKIRGRLINLVTHSFQELGKMVTKQNCFGT 230
           IL  +G++L    WK       +Y F +++   R  +  L  HSF  LG + +    + T
Sbjct: 300 ILASKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSNHSFHFLGYLSSLLKNYST 359

Query: 231 PRN 239
            RN
Sbjct: 360 VRN 362


>sp|Q4H186|MATK_PILTE Maturase K OS=Pillansia templemannii GN=matK
           PE=3 SV=1
          Length = 522

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 51  ILIVEGSYLG*INWKKKLYLRRKYVFSYYFSKIRGRLINLVTHSFQELGKMVTKQNCFGT 230
           IL+ +G++L    WK       +Y F +++   R  +  L  HSF  LG + +      T
Sbjct: 300 ILVSKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSKHSFHFLGYLSSLLKNSST 359

Query: 231 PRN 239
            RN
Sbjct: 360 VRN 362


>sp|Q4H195|MATK_LAPNE Maturase K OS=Lapeirousia neglecta GN=matK
           PE=3 SV=1
          Length = 522

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 51  ILIVEGSYLG*INWKKKLYLRRKYVFSYYFSKIRGRLINLVTHSFQELGKMVTKQNCFGT 230
           IL+ +G++L    WK       +Y F +++   R  +  L  HSF  LG + +      T
Sbjct: 300 ILVSKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSNHSFYFLGYLSSLLKNSST 359

Query: 231 PRN 239
            RN
Sbjct: 360 VRN 362


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 381
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q4H192|MATK_MICJU Maturase K OS=Micranthus juncus GN=matK PE=3
           SV=1
          Length = 522

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 51  ILIVEGSYLG*INWKKKLYLRRKYVFSYYFSKIRGRLINLVTHSFQELGKMVTKQNCFGT 230
           IL+ +G++L    WK       +Y F +++   R  +  L  HSF  LG + +      T
Sbjct: 300 ILVSKGTHLLMKKWKYNFVNLWQYYFYFWYQSYRIHINQLSKHSFHFLGYLSSLLKNSST 359

Query: 231 PRN 239
            RN
Sbjct: 360 VRN 362
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947599|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G18, 5'
         (464 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   2.4  
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -1

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLPVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 238 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 402
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796