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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947600
Clone id YMU02A01NGRL0016_G19
Library
Length 722
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_G19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGCCCATTACGGCCGGGGACCTAGTAAGCGTCCGCTT
GTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGA
GAGCTCCCTTACTCAAGATCCAGCCATGTCTGAAGAGCACCACCATCGCCACCACTTTGG
GCATCACAAGCAAGAGGATGACGCTCCTCCACCCCCGCCTGCCGATTACACCTACTCCGA
GGATGCCGTGCCCATCCAGTACACAGAATATTATGATGGGCCGCGCCGCCCTTCTGGCTA
CAGCACTACCACCGAAACCACCGAGGTGGTTGTGAAAACAGACGAGCATGGAAAGAAACA
TGAGGAGGAGCACAAGACCAAAGAGCACGTTGGAGAAGCTCTTGGCGCAGCAGCTGGCGC
TTATGCCTTGTATGAGCGTCATGAAGCGAGGAAGGACTCAGAGCATGCAGGGCGCCACAA
GATGGAAGAGCGGATAGCAGAGGCTGTTGTTGTGAGTGCCGGCGGGTATGCGCTCCATGA
GCACCATGAGAAGAAAGAGTCAGTGGAGGAGGAAGAGGGTCATAAGAAGAAACACCACTT
CTTCTAAGTGCCTTTGTTTTTTGCTTGATGGTTTTGTCATGGGTGATACATGTTACATAT
CAAAACATGGTTGTTTTCCTGTGGTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
■■Homology search results ■■ -
sp_hit_id Q08655
Definition sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum lycopersicum
Align length 32
Score (bit) 47.0
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947600|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G19, 5'
         (648 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solan...    47   9e-05
sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solan...    42   0.003
sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solan...    39   0.031
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        32   2.2  
sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subu...    30   8.3  
sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subu...    30   8.3  
sp|Q5R8W9|SEPP1_PONAB Selenoprotein P OS=Pongo abelii GN=SEPP1 P...    30   8.3  
sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musc...    30   8.3  
sp|Q9HCD5|NCOA5_HUMAN Nuclear receptor coactivator 5 OS=Homo sap...    30   8.3  
sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori GN...    30   8.3  
sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 1...    30   8.3  

>sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum
           lycopersicum GN=ASR1 PE=2 SV=1
          Length = 115

 Score = 47.0 bits (110), Expect = 9e-05
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHA +HK+EE IA A  V AGG+A
Sbjct: 54  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFA 85


>sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solanum
           lycopersicum GN=ASR2 PE=4 SV=1
          Length = 114

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +H+A+KD EHA +HK+EE I     V AGG+A
Sbjct: 56  KHKAKKDPEHAHKHKIEEEIMAVAAVGAGGFA 87


>sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solanum
           lycopersicum GN=ASR3 PE=4 SV=2
          Length = 108

 Score = 38.5 bits (88), Expect = 0.031
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +H+A+KD E+A +HK+++ IA    V AGG+A
Sbjct: 54  KHKAKKDPENAHKHKIKQEIAAVAAVGAGGFA 85


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 316  SFHARLFSQPPRWFRW*CCSQKGGAAHHNILCTGWARHPRSRCNRQAGVEERHPLACDAQ 137
            SF  R F    +WF   C       +H++ILC  W    +  C+ + GV     L C AQ
Sbjct: 1612 SFQGRYFKLQEQWFNPDCKEICTCESHNHILCKPWKCKAQEACSYKNGV-----LGCHAQ 1666


>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit
           9B OS=Pongo abelii GN=TAF9B PE=2 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 125 IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 238
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209


>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit
           9B OS=Homo sapiens GN=TAF9B PE=1 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 125 IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 238
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209


>sp|Q5R8W9|SEPP1_PONAB Selenoprotein P OS=Pongo abelii GN=SEPP1 PE=2
           SV=2
          Length = 381

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 426 CRAPQDGRADSRGCCCECRRV 488
           C+ P+D     R CCC CR +
Sbjct: 287 CKLPKDSELAPRSCCCHCRHL 307


>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus
            GN=Ncor2 PE=1 SV=2
          Length = 2472

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 607  ITHDKTIKQKTKALRRSGVSSY--DPLPPPLTLSSHGAHGAHTRRHSQQQPLLSAL 446
            +THDK + +  + L +S +        P P+ LS+  AH  H R   + QP  S L
Sbjct: 2019 LTHDKGLSKPLEELEKSHLEGELRHKQPGPMKLSAEAAHLPHLRPLPESQPSSSPL 2074


>sp|Q9HCD5|NCOA5_HUMAN Nuclear receptor coactivator 5 OS=Homo
           sapiens GN=NCOA5 PE=1 SV=2
          Length = 579

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -3

Query: 619 YVTCITHDKTIKQKTKALRRSGVSSYDPLPPPLTLSSHGA-HGAHTRRHSQQQPLLS--A 449
           Y+T    DK I    +   R   SS D LP P++    GA  GA  +     QPL S   
Sbjct: 354 YLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQV 413

Query: 448 LPSCGALHALSPSSLHDAHTR 386
           LPS     +  P+S  +   +
Sbjct: 414 LPSATPTPSAPPTSQQELQAK 434


>sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori
           GN=GATA-B PE=2 SV=1
          Length = 508

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +3

Query: 87  PYSRSSHV*RAPPSP---PLWASQARG*RSSTPACRLHLLRGCRAHPVHRIL*WAAPPFW 257
           PYS        PP+P   P  AS   G  SS P  R   LR     P+H       PP+ 
Sbjct: 48  PYSHLDDSLFKPPTPGSAPPTASTCAGVPSSAPRRRPRRLRP--PAPLHYDDYAPPPPYS 105

Query: 258 LQHYHRNHRGGCENRRAWKET*GGAQDQRA 347
             H+H   +GG  N  A + T    Q +RA
Sbjct: 106 HDHHHHLEQGGGGNGAASRCTAVRLQQRRA 135
tr_hit_id Q5MDK9
Definition tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein (Fragment) OS=Pseudotsuga menziesii var. menziesii
Align length 32
Score (bit) 51.6
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947600|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_G19, 5'
         (648 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein ...    52   4e-05
tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1          49   2e-04
tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci2...    49   3e-04
tr|Q6IT49|Q6IT49_MUSAC Abscisic stress ripening protein-like pro...    48   6e-04
tr|B8YQ15|B8YQ15_MUSAC Abscisic stress ripening protein OS=Musa ...    48   6e-04
tr|A9NQS8|A9NQS8_PICSI Putative uncharacterized protein OS=Picea...    48   6e-04
tr|A9P0F2|A9P0F2_PICSI Putative uncharacterized protein OS=Picea...    47   8e-04
tr|Q9SEW0|Q9SEW0_LILLO Anth (Pollen-specific desiccation-associa...    47   0.001
tr|Q2QJV3|Q2QJV3_SOLCE ASR1 OS=Solanum cheesmanii GN=Asr1 PE=4 SV=1    47   0.001
tr|Q2QJV2|Q2QJV2_SOLLC ASR1 OS=Solanum lycopersicum var. cerasif...    47   0.001
tr|Q2QJV1|Q2QJV1_SOLHA ASR1 OS=Solanum habrochaites GN=Asr1 PE=4...    47   0.001
tr|Q2QJV0|Q2QJV0_SOLPE ASR1 OS=Lycopersicon peruvianum var. humi...    47   0.001
tr|Q2QJU9|Q2QJU9_SOLCI ASR1 OS=Solanum chilense GN=Asr1 PE=4 SV=1      47   0.001
tr|Q2QJU8|Q2QJU8_9SOLN ASR1 OS=Solanum corneliomuelleri GN=Asr1 ...    47   0.001
tr|O82575|O82575_SOLLC Fruit-ripening protein OS=Solanum lycoper...    47   0.001
tr|Q948L3|Q948L3_SACOF Drought inducible 22 kD protein OS=Saccha...    47   0.001
tr|Q6EBV8|Q6EBV8_9POAL 22 kDa drought-inducible protein OS=Sacch...    47   0.001
tr|B4FKG5|B4FKG5_MAIZE Abscisic stress ripening protein 2 OS=Zea...    47   0.001
tr|A8IK82|A8IK82_MAIZE Dip protein OS=Zea mays PE=4 SV=1               47   0.001
tr|A9P0G6|A9P0G6_PICSI Putative uncharacterized protein OS=Picea...    46   0.002
tr|A9NPQ5|A9NPQ5_PICSI Putative uncharacterized protein OS=Picea...    46   0.002
tr|Q93WZ6|Q93WZ6_PRUPE Abscisic stress ripening-like protein OS=...    46   0.002
tr|Q9FRV9|Q9FRV9_CALSL Putative ripening protein OS=Calystegia s...    45   0.003

>tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1
          Length = 181

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD EHA RHK+EE +A A  V AGGYA
Sbjct: 123 KHEAKKDPEHAHRHKIEEEVAAAAAVGAGGYA 154


>tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 157

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYA 492
           +HEA+KD E+AGRHK+EE IA A  V +GGYA
Sbjct: 100 KHEAKKDPENAGRHKIEEEIAAAAAVGSGGYA 131


>tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci21A
           PE=4 SV=1
          Length = 109

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 397 RHEARKDSEHAGRHKMEERIAEAVVVSAGGYAL 495
           +HEA+KD EHA +HK+EE IA A  V AGG+AL
Sbjct: 53  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAL 85