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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947621
Clone id YMU02A01NGRL0016_H18
Library
Length 177
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_H18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGAGCGATTTGAGAAAACTCTTTCGTTAGTGCTGCAGGTGAGGGGCGATCTGGTGCAGG
CCTCTCCATCCTCGGCACCATGTTGATTTCTAAGAAGAATCGAGTGGAAGTTTACAAGTA
TCTTTTCAAAGAGGGGGTTCTCTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O77302
Definition sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus
Align length 21
Score (bit) 38.9
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947621|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_H18, 5'
         (147 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rube...    39   0.008
sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa s...    37   0.039
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera fru...    35   0.11 
sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila m...    35   0.15 
sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis...    35   0.15 
sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicu...    33   0.43 
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus G...    33   0.43 
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punc...    33   0.43 
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens G...    33   0.43 
sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=...    33   0.43 
sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis...    33   0.43 
sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis...    33   0.43 
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis...    31   1.7  
sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like pr...    31   1.7  
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila m...    31   2.2  
sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium ...    29   6.3  

>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus
           rubellus GN=RPS10 PE=2 SV=1
          Length = 156

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+SKKNRV +Y+YLFKEGVL
Sbjct: 1   MLMSKKNRVMIYEYLFKEGVL 21


>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa
           subsp. japonica GN=RPS10 PE=2 SV=2
          Length = 183

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           M+I KKNR E+ KYLF+EGVLY
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLY 22


>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera
           frugiperda GN=RpS10 PE=2 SV=1
          Length = 158

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ K+NRV +Y+YLFKEGV+
Sbjct: 1   MLMPKQNRVAIYEYLFKEGVM 21


>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila
           melanogaster GN=RpS10a PE=2 SV=1
          Length = 163

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           M I K NRV +Y+YLFKEGVL
Sbjct: 1   MFIPKANRVAIYEYLFKEGVL 21


>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis
           thaliana GN=RPS10B PE=2 SV=1
          Length = 180

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           M+IS+ NR E+ KYLFKEGVL+
Sbjct: 1   MIISETNRREISKYLFKEGVLF 22


>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus
           GN=Rps10 PE=2 SV=1
          Length = 165

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ KKNR+ +Y+ LFKEGV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVM 21


>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus
           GN=Rps10 PE=1 SV=1
          Length = 165

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ KKNR+ +Y+ LFKEGV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVM 21


>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus
           punctatus GN=rps10 PE=2 SV=1
          Length = 166

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ KKNR+ +Y+ LFKEGV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVM 21


>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens
           GN=RPS10 PE=1 SV=1
          Length = 165

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ KKNR+ +Y+ LFKEGV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVM 21


>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus
           GN=RPS10 PE=2 SV=1
          Length = 165

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           ML+ KKNR+ +Y+ LFKEGV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVM 21
tr_hit_id A9U1Y5
Definition tr|A9U1Y5|A9U1Y5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 22
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947621|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_H18, 5'
         (147 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U1Y5|A9U1Y5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9TL01|A9TL01_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9SMN2|A9SMN2_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9SDE8|A9SDE8_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9S2B5|A9S2B5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9RNA9|A9RNA9_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9TPI3|A9TPI3_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.004
tr|A9NZ81|A9NZ81_PICSI Putative uncharacterized protein OS=Picea...    43   0.009
tr|A9NNR4|A9NNR4_PICSI Putative uncharacterized protein OS=Picea...    43   0.009
tr|A8J4Q3|A8J4Q3_CHLRE Ribosomal protein S10 OS=Chlamydomonas re...    40   0.059
tr|B6T8R3|B6T8R3_MAIZE 40S ribosomal protein S10 OS=Zea mays PE=...    38   0.22 
tr|B6T8E7|B6T8E7_MAIZE 40S ribosomal protein S10 OS=Zea mays PE=...    38   0.22 
tr|B4FSW0|B4FSW0_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.22 
tr|Q94DM7|Q94DM7_ORYSJ Putative 40S ribosomal protein S10 (Putat...    38   0.29 
tr|B4FW06|B4FW06_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|A2WZD5|A2WZD5_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q6EUZ6|Q6EUZ6_CARGR S10e ribosomal protein OS=Carabus granula...    38   0.29 
tr|Q6EUZ4|Q6EUZ4_CURGL S10e ribosomal protein OS=Curculio glandi...    37   0.38 
tr|Q4PMD3|Q4PMD3_IXOSC 40S ribosomal protein S10, putative OS=Ix...    37   0.38 
tr|B6UIM2|B6UIM2_MAIZE 40S ribosomal protein S10 OS=Zea mays PE=...    37   0.50 
tr|Q70MT4|Q70MT4_CRAGI Ribosomal protein S10 OS=Crassostrea giga...    37   0.50 
tr|Q56FF9|Q56FF9_LYSTE Ribosomal protein S10 OS=Lysiphlebus test...    37   0.50 
tr|Q6Z105|Q6Z105_ORYSJ Os02g0549600 protein OS=Oryza sativa subs...    37   0.65 
tr|Q01LH6|Q01LH6_ORYSA B0222C05.3 protein OS=Oryza sativa GN=B02...    37   0.65 
tr|B8AJD1|B8AJD1_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.65 
tr|Q4KTD2|Q4KTD2_SUBDO S10 OS=Suberites domuncula PE=2 SV=1            36   0.85 
tr|Q4GXS9|Q4GXS9_9COLE Ribosomal protein S10e OS=Georissus sp. A...    36   0.85 
tr|A7RLM9|A7RLM9_NEMVE Predicted protein OS=Nematostella vectens...    36   0.85 
tr|B7FGT6|B7FGT6_MEDTR Putative uncharacterized protein OS=Medic...    35   1.5  
tr|Q5MGM0|Q5MGM0_LONON Ribosomal protein 1 OS=Lonomia obliqua PE...    35   1.5  

>tr|A9U1Y5|A9U1Y5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173229 PE=4 SV=1
          Length = 178

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFKEGVLY 22


>tr|A9TL01|A9TL01_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_108357 PE=4 SV=1
          Length = 177

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFKEGVLY 22


>tr|A9SMN2|A9SMN2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_213919 PE=4 SV=1
          Length = 180

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFKEGVLY 22


>tr|A9SDE8|A9SDE8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_211089 PE=4 SV=1
          Length = 176

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFKEGVLY 22


>tr|A9S2B5|A9S2B5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_180546 PE=4 SV=1
          Length = 180

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFKEGVLY 22


>tr|A9RNA9|A9RNA9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_176644 PE=4 SV=1
          Length = 182

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVE+YKYLFKEGVLY
Sbjct: 1   MLIPKKNRVEIYKYLFKEGVLY 22


>tr|A9TPI3|A9TPI3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_37614 PE=4 SV=1
          Length = 160

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNRVEVYKYLF+EGVLY
Sbjct: 1   MLIPKKNRVEVYKYLFQEGVLY 22


>tr|A9NZ81|A9NZ81_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 185

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNR EVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRNEVYKYLFKEGVLY 22


>tr|A9NNR4|A9NNR4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVLY 145
           MLI KKNR EVYKYLFKEGVLY
Sbjct: 1   MLIPKKNRNEVYKYLFKEGVLY 22


>tr|A8J4Q3|A8J4Q3_CHLRE Ribosomal protein S10 OS=Chlamydomonas
           reinhardtii GN=RPS10 PE=4 SV=1
          Length = 173

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +2

Query: 80  MLISKKNRVEVYKYLFKEGVL 142
           MLI KKNR EVYKYLFKEGVL
Sbjct: 1   MLIPKKNRREVYKYLFKEGVL 21