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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947645
Clone id YMU02A01NGRL0016_I24
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_I24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGGAGATAAGATGTCGTGCTGCAATGGTAACTGTGGGTGCGGCGCAAACTGTCAATGCGC
CAGCGGCTGCGAGGGGTGCGGCCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCT
CGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCTATGAAAGGGCTCTAGGTTTCGGAGT
GGAGAACATCTCTGGGTATCGTGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGAGCTTA
AGGTAGCCTAGTACAAGGGGTTGCCTTAATAACACCAAAAATAATGTATTTGTATTTAGT
TAATAGTCAGTCGTGCAATTAACATCCATGGATCGCTTGTACATAGCATGCTCACCTTTG
TAATCTTGGAATTTGGTAATGATAATGATAATGGCTTAAGCCAAGCCATACAATATAAAA
CAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947645|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_I24, 5'
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    35   0.12 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.34 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    33   0.58 
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    33   0.58 
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   2.9  
sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA P...    30   4.9  
sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain C...    30   4.9  
sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia c...    29   6.4  
sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog OS=Esche...    29   6.4  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   6.4  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 57  H*QFAPHPQLPLQHD 13
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 57  H 55
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 57  H*QFAPHPQLPLQHD 13
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 57  H*QFAPHPQLPLQHD 13
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 210  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-SQPLAH*QFAPHP 34
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P +QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 33   QLP 25
              P
Sbjct: 1033 AAP 1035


>sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA PE=3
            SV=2
          Length = 1249

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 210  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-SQPLAH*QFAPHP 34
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P +QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 33   QLP 25
              P
Sbjct: 1033 AEP 1035


>sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain CEA10
            / CBS 144.89 / FGSC A1163) GN=myoA PE=3 SV=2
          Length = 1249

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 210  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-SQPLAH*QFAPHP 34
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P +QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 33   QLP 25
              P
Sbjct: 1033 AEP 1035


>sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia coli
           (strain K12) GN=zipA PE=1 SV=3
          Length = 328

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 81  PHPSQPLAH*QFAPHPQLPLQHDI 10
           PHP+QP+    + P P+ PLQ  +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=zipA PE=3 SV=1
          Length = 328

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 81  PHPSQPLAH*QFAPHPQLPLQHDI 10
           PHP+QP+    + P P+ PLQ  +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
           populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
           GN=glmM PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 130 CHCLR-LPQL*KGSRFRSGEHL 192
           CHC   LPQ+ K  RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947645|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_I24, 5'
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   5.4  
tr|A9JSU1|A9JSU1_DANRE Hbl4 protein OS=Danio rerio GN=hbl4 PE=2 ...    33   9.2  
tr|Q8MIM5|Q8MIM5_PIG Transcription factor GATA-4 OS=Sus scrofa P...    33   9.2  
tr|Q5IFM8|Q5IFM8_HUMAN GATA binding protein 4 OS=Homo sapiens GN...    33   9.2  
tr|B7ZKX0|B7ZKX0_HUMAN GATA binding protein 4 OS=Homo sapiens GN...    33   9.2  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -3

Query: 78  HPSQPLAH*QFAPHPQLPLQHDI 10
           HP QPL H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 57  H 55
           H
Sbjct: 201 H 201


>tr|A9JSU1|A9JSU1_DANRE Hbl4 protein OS=Danio rerio GN=hbl4 PE=2
           SV=1
          Length = 245

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 92  SLVLSKEAPLVLSATASVCPSYERALGFGVENISGYRGSP 211
           +++L  E+ L+LSA+ S CPSY      GV  I G  GSP
Sbjct: 10  AVLLMMESGLILSASESSCPSYA-----GVPGIPGNNGSP 44


>tr|Q8MIM5|Q8MIM5_PIG Transcription factor GATA-4 OS=Sus scrofa PE=2
           SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 57  H*QFAPHPQLPLQHD 13
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>tr|Q5IFM8|Q5IFM8_HUMAN GATA binding protein 4 OS=Homo sapiens
           GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 57  H*QFAPHPQLPLQHD 13
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>tr|B7ZKX0|B7ZKX0_HUMAN GATA binding protein 4 OS=Homo sapiens
           GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 237 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLA 58
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 57  H*QFAPHPQLPLQHD 13
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210