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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947650
Clone id YMU02A01NGRL0016_J05
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_J05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CAGTACTGCGTTTCATGCGCCATTCACTCTCACGTTGTCCGTGTGAGATCCCGCACAGCA
AGAAGAGTTCGGGAGCCACCTCAAAGGTTTAGACGCAAGGAGGATATGCAGAATCAGAAT
CAGCGTACCAATGTTCCTGCTGTTAGGAAGTGAAGCGGCGTTTAGTTAGTGCATAAGCCA
GTAGAGGAAGAAGGCTCATGAATTTTGACTTCTATCATAGAACTCTTAGAAGAGCATGCT
ACGAGCATTGCCACTACTGTTGAAGCCATCAATTGGATGGACGTTGAGGGACTTTTGAGT
CTTTTGGACGGGCTTGTATCTGATGTTTTGGAAATGTCTTTCTAATGTTTTTTCACACAT
TTGCACGGTTCCTTGATGCTGGCTGTGACGTGTGCTCTATTGCATGTAGACGGGTATAGT
TATTTTCTGTTATTGTATTTGTCATTTAGATTTTTCTGACCCGAANAAAAACAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q06VD6
Definition sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF147 OS=Trichoplusia ni ascovirus 2c
Align length 58
Score (bit) 30.0
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947650|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_J05, 5'
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF1...    30   5.0  
sp|Q9LYK9|RS263_ARATH 40S ribosomal protein S26-3 OS=Arabidopsis...    30   5.1  
sp|Q8LPJ7|RS262_ARATH 40S ribosomal protein S26-2 OS=Arabidopsis...    30   5.1  
sp|P49206|RS261_ARATH 40S ribosomal protein S26-1 OS=Arabidopsis...    30   5.1  
sp|Q54TL8|RS26_DICDI 40S ribosomal protein S26 OS=Dictyostelium ...    30   6.7  
sp|P09615|WNTG_DROME Protein wingless OS=Drosophila melanogaster...    29   8.5  

>sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF147
            OS=Trichoplusia ni ascovirus 2c GN=ORF147 PE=1 SV=1
          Length = 1481

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 452  NLNDKYNNRK*LYPSTCNRAHVTASI-KEPCKCVKKH*KDISKTSDTSPSKRLKSPST 282
            N ND YNNRK        + H++ S  + P + +K+  K+I+  +D S SK  +S S+
Sbjct: 1347 NTNDDYNNRK--------KVHLSKSTSRSPKRNLKR--KEINNDNDASTSKNRRSSSS 1394


>sp|Q9LYK9|RS263_ARATH 40S ribosomal protein S26-3 OS=Arabidopsis
           thaliana GN=RPS26C PE=2 SV=1
          Length = 130

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   QYCVSCAIHSH 33
           QYCVSCAIHSH
Sbjct: 72  QYCVSCAIHSH 82


>sp|Q8LPJ7|RS262_ARATH 40S ribosomal protein S26-2 OS=Arabidopsis
           thaliana GN=RPS26B PE=2 SV=2
          Length = 133

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   QYCVSCAIHSH 33
           QYCVSCAIHSH
Sbjct: 72  QYCVSCAIHSH 82


>sp|P49206|RS261_ARATH 40S ribosomal protein S26-1 OS=Arabidopsis
           thaliana GN=RPS26A PE=2 SV=2
          Length = 131

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   QYCVSCAIHSH 33
           QYCVSCAIHSH
Sbjct: 72  QYCVSCAIHSH 82


>sp|Q54TL8|RS26_DICDI 40S ribosomal protein S26 OS=Dictyostelium
           discoideum GN=rps26 PE=3 SV=1
          Length = 112

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   QYCVSCAIHSH 33
           QYC+SCAIHSH
Sbjct: 74  QYCISCAIHSH 84


>sp|P09615|WNTG_DROME Protein wingless OS=Drosophila melanogaster
           GN=wg PE=1 SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 455 KNLNDKYNNRK*LYPSTCNRAHVTASIKEPCKC 357
           +NL +K N    L+ +   RAHV A +++ CKC
Sbjct: 207 RNLREKMN----LHNNEAGRAHVQAEMRQECKC 235
tr_hit_id B0EGN5
Definition tr|B0EGN5|B0EGN5_ENTDI Calcium/calmodulin-dependent protein kinase type 1D, putative OS=Entamoeba dispar SAW760
Align length 62
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947650|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_J05, 5'
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0EGN5|B0EGN5_ENTDI Calcium/calmodulin-dependent protein kina...    33   5.4  

>tr|B0EGN5|B0EGN5_ENTDI Calcium/calmodulin-dependent protein kinase
           type 1D, putative OS=Entamoeba dispar SAW760
           GN=EDI_111390 PE=4 SV=1
          Length = 397

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
 Frame = -3

Query: 341 KDISKTSDTSPS-------KRLKSPSTSIQLMASTVVAMLVA-CSSKSSMIEVKIHEPSS 186
           K + K S+++ S       K   SPS++ Q+ +S V+    A C  +S+ I++KIHEP+ 
Sbjct: 26  KPVRKRSNSTRSGIRLGMRKGTPSPSSTPQIQSSVVIESKEAPCVIESNKIDIKIHEPNQ 85

Query: 185 ST 180
            T
Sbjct: 86  KT 87