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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947651
Clone id YMU02A01NGRL0016_J06
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_J06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGACGAGTCAGATGTGTTATCTACAGGGCGGTTCTAGCTCAGGGTGTTTAACCATGTC
TGCTTCTCTGCTACTGCTCCCCCTTCTACTGCTCATGTTGGTCTGCAGAGTGAGCTACAT
TGTCGCAGATAGCAAGCTCGCGCAGCCCGCGCTCTCAGGAGGCCAAGAAAGAGGTGCATT
GAGTGAAGCAGATCAATTGGGTCTTCTCAATAATGTTACAGATTGGGAGATAATTCCTCA
CCCTGGATTGGCGAACCAATTTTTCAATACCAGCCGGCGGACGCTAGGGAGTTTTCGTGT
GTGTGCGCTGTGCACATGCTGTGGTGGGCGCCGAAGGTTTTGCATACCAACAGCATGCTG
TTATGCAATCACATGTGGCTCTCCCAACCGGCCTTTTGGCTTCTGTTCGTTCAAACCGAT
GTCATGTAATTGTCTTGGGTGTCGTCTATAGGCAGACCATGTAACATTAGTATAGTGGTT
TGGCTCAATGGAGCTTGTTGAGCCTTCCACAATGTTAAGTGAAGCTGCTCTGGAATGTTA
AGTGA
■■Homology search results ■■ -
sp_hit_id P36000
Definition sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae
Align length 41
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947651|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_J06, 5'
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyc...    32   2.6  
sp|Q7ZXL5|NELL2_XENLA Protein kinase C-binding protein NELL2 OS=...    31   4.4  
sp|A8MTY7|KR921_HUMAN Putative keratin-associated protein 9-2-li...    31   4.4  
sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Ho...    31   4.4  
sp|A2VCU8|NELL2_XENTR Protein kinase C-binding protein NELL2 OS=...    30   5.8  
sp|Q9D226|KRA53_MOUSE Keratin-associated protein 5-3 OS=Mus musc...    30   5.8  
sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 OS=Homo sap...    30   5.8  
sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2       30   7.6  
sp|Q2JW78|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp....    30   7.6  
sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN...    30   9.9  
sp|Q8BFU8|VGLU3_MOUSE Vesicular glutamate transporter 3 OS=Mus m...    30   9.9  
sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus mu...    30   9.9  

>sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces
           cerevisiae GN=APL2 PE=1 SV=1
          Length = 726

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 259 IFQYQPADAREFSCVCAVHMLWWAPKVLHTNSMLLCNHMWL 381
           + ++ P + +    VCAV   W  P+VL  + +  CN++WL
Sbjct: 433 LLRHCPGNDKMAKQVCAVFNTWSNPEVLLQSDIAKCNYVWL 473


>sp|Q7ZXL5|NELL2_XENLA Protein kinase C-binding protein NELL2
           OS=Xenopus laevis GN=nell2 PE=2 SV=1
          Length = 814

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 CALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFC-SFKPMSCNCLGCR 445
           C  CTC  G       TA C  +TC +PN   GF  ++ P  C C  C+
Sbjct: 289 CKKCTCTNG-------TAQCETLTCSAPNCLSGFSPAYVPGKC-CKECQ 329


>sp|A8MTY7|KR921_HUMAN Putative keratin-associated protein 9-2-like
           1 OS=Homo sapiens PE=3 SV=1
          Length = 169

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSP---NRPFGFCSFKPMSCNCL 436
           NT  RT      C + +CC   +  C  T CC  I CGS        G    +P SC  +
Sbjct: 54  NTCCRTTCCQPTC-VTSCC---QPSCCSTPCCQPICCGSSCCGQTSCGSSCCQPSSCAPI 109

Query: 437 GCRL*ADHVTLV 472
            CR    H T V
Sbjct: 110 YCRRTCYHPTSV 121


>sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Homo
           sapiens GN=CRIM2 PE=2 SV=2
          Length = 1503

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
 Frame = +2

Query: 248 LANQFFNTSRRTLGSFRVCALCTCCGG----RRRFCIPTACCYAITCGSPNRPFGFCSFK 415
           L+NQ F   R        C LCTC GG     RR C P  C +      P  P G C   
Sbjct: 727 LSNQEFPDPREP------CNLCTCLGGFVTCGRRPCEPPGCSH------PLIPSGHC--- 771

Query: 416 PMSCNCLGCR 445
                C GCR
Sbjct: 772 --CPTCQGCR 779


>sp|A2VCU8|NELL2_XENTR Protein kinase C-binding protein NELL2
           OS=Xenopus tropicalis GN=nell2 PE=2 SV=1
          Length = 814

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 302 CALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFC-SFKPMSCNCLGCRL*ADHVTLV*W 478
           C  CTC  G       TA C  +TC  PN   GF  ++ P  C C  C+    +   + +
Sbjct: 289 CKKCTCTNG-------TAQCETLTCSVPNCLSGFAPAYVPGKC-CKECQPVCMYQGQMYF 340

Query: 479 FGSMELVEPST 511
            G  E V+ S+
Sbjct: 341 EGEQEAVQSSS 351


>sp|Q9D226|KRA53_MOUSE Keratin-associated protein 5-3 OS=Mus
           musculus GN=Krtap5-3 PE=2 SV=1
          Length = 196

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 311 CTCCGG-RRRFCIPTACCYAI-TCGSPNRPFGFCSFKPMSCNCLGCR 445
           C CCGG     C P  CC  + +C S     G CS      +C GC+
Sbjct: 4   CGCCGGCGSSCCKPVCCCVPVCSCSSCGGCKGGCSSCGGCGSCGGCK 50


>sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 OS=Homo
           sapiens GN=KRTAP5-1 PE=2 SV=1
          Length = 278

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +2

Query: 320 CGGRRRFC-IPTACCYAITCGSPNRPFGFCSFKPMSCNC 433
           CGG    C +P  CC   +CGS     G C      C+C
Sbjct: 201 CGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC 239


>sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2
          Length = 5146

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 302  CALCTCCGGRRRFCIPTACCYAITCG 379
            C LC C  GR R C P+  C A+ CG
Sbjct: 1884 CQLCVCQDGRPRRCQPSLDC-AVNCG 1908


>sp|Q2JW78|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1
          Length = 394

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 218 TDWEIIPHPGLANQFFNTSRRTLGSFRVCALCTCCGGRRR 337
           TD ++ P  G A Q    +R   G+F   ++C  CGG  R
Sbjct: 161 TDVKVCPTCGGAGQVRRATRTPFGNFTQVSICPTCGGAGR 200


>sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN=VWF
            PE=1 SV=2
          Length = 2813

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 227  EIIPHPGLANQFFNTSRRTLGSFRVCALCTCCGGRRRFCI--PTACCYAITCG 379
            + I   G+ +QF  T    + + + C +CTC  GR+  C   P     A TCG
Sbjct: 2256 QCISEDGVRHQFLET---WVPAHQPCQICTCLSGRKVNCTLQPCPTARAPTCG 2305
tr_hit_id A9NQF0
Definition tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 80
Score (bit) 119.0
E-value 1.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947651|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_J06, 5'
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea...   119   1e-25
tr|A7PV94|A7PV94_VITVI Chromosome chr4 scaffold_32, whole genome...   108   1e-22
tr|Q949T1|Q949T1_ARATH Putative uncharacterized protein At1g6529...   103   6e-21
tr|Q8L9P3|Q8L9P3_ARATH Putative uncharacterized protein OS=Arabi...   103   6e-21
tr|Q8H130|Q8H130_ARATH Putative uncharacterized protein At1g6529...   103   6e-21
tr|Q2HW15|Q2HW15_MEDTR Putative uncharacterized protein OS=Medic...   103   8e-21
tr|B7FHF8|B7FHF8_MEDTR Putative uncharacterized protein OS=Medic...   101   2e-20
tr|B6T9L5|B6T9L5_MAIZE Putative uncharacterized protein OS=Zea m...    97   4e-19
tr|B6T7C1|B6T7C1_MAIZE Putative uncharacterized protein OS=Zea m...    97   4e-19
tr|A2WYC9|A2WYC9_ORYSI Putative uncharacterized protein OS=Oryza...    97   6e-19
tr|Q2R4R8|Q2R4R8_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    97   7e-19
tr|B6SN62|B6SN62_MAIZE Putative uncharacterized protein OS=Zea m...    97   7e-19
tr|A2ZE23|A2ZE23_ORYSI Putative uncharacterized protein OS=Oryza...    97   7e-19
tr|Q5JLC4|Q5JLC4_ORYSJ Putative uncharacterized protein P0413C03...    96   9e-19
tr|A3A0X6|A3A0X6_ORYSJ cDNA, clone: J065041P21, full insert sequ...    96   9e-19
tr|B6UGH9|B6UGH9_MAIZE Putative uncharacterized protein OS=Zea m...    92   2e-17
tr|B6U3G4|B6U3G4_MAIZE Putative uncharacterized protein OS=Zea m...    92   2e-17
tr|B6TT45|B6TT45_MAIZE Putative uncharacterized protein OS=Zea m...    92   2e-17
tr|B4FVQ6|B4FVQ6_MAIZE Putative uncharacterized protein OS=Zea m...    92   2e-17
tr|A9RCJ8|A9RCJ8_PHYPA Predicted protein (Fragment) OS=Physcomit...    92   2e-17
tr|A9RK92|A9RK92_PHYPA Predicted protein (Fragment) OS=Physcomit...    91   5e-17
tr|A9RB81|A9RB81_PHYPA Predicted protein OS=Physcomitrella paten...    89   2e-16
tr|A9TZE1|A9TZE1_PHYPA Predicted protein OS=Physcomitrella paten...    87   6e-16
tr|A9S1I6|A9S1I6_PHYPA Predicted protein (Fragment) OS=Physcomit...    87   8e-16
tr|A7Q9T5|A7Q9T5_VITVI Chromosome chr8 scaffold_68, whole genome...    64   5e-09
tr|A5B5S3|A5B5S3_VITVI Putative uncharacterized protein OS=Vitis...    64   5e-09
tr|Q2RB88|Q2RB88_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    60   1e-07
tr|Q2QYG0|Q2QYG0_ORYSJ Os12g0121000 protein OS=Oryza sativa subs...    60   1e-07
tr|A2ZHJ5|A2ZHJ5_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A2ZAW4|A2ZAW4_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07

>tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score =  119 bits (297), Expect = 1e-25
 Identities = 48/80 (60%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +2

Query: 212 NVTDWEIIPHPGLAN-QFFNTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPN 388
           N T WE+ P P  A+ Q FN +RR LG+F++C+LCTCCGGR   C+P+ CCYAI C  PN
Sbjct: 58  NHTTWEMRPFPSEASYQIFNETRRKLGTFQICSLCTCCGGRHHLCLPSPCCYAINCNIPN 117

Query: 389 RPFGFCSFKPMSCNCLGCRL 448
           RPFG CSF P +CNC GC L
Sbjct: 118 RPFGLCSFTPKACNCFGCHL 137


>tr|A7PV94|A7PV94_VITVI Chromosome chr4 scaffold_32, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025103001
           PE=4 SV=1
          Length = 117

 Score =  108 bits (271), Expect = 1e-22
 Identities = 42/61 (68%), Positives = 48/61 (78%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 445
           N SRR LGSF++CALCTCCGG +  C+P+ CCYAI C  PNRPFGFCSF P +CNC GC 
Sbjct: 57  NESRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH 116

Query: 446 L 448
           L
Sbjct: 117 L 117


>tr|Q949T1|Q949T1_ARATH Putative uncharacterized protein At1g65295
           (Fragment) OS=Arabidopsis thaliana GN=At1g65295 PE=2
           SV=2
          Length = 105

 Score =  103 bits (257), Expect = 6e-21
 Identities = 37/61 (60%), Positives = 48/61 (78%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 445
           N +RR LGSF++C++CTCCGG +  C+P+ CCYAI C  PNRPFG+CSF P +CNC GC 
Sbjct: 45  NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 104

Query: 446 L 448
           +
Sbjct: 105 I 105


>tr|Q8L9P3|Q8L9P3_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 115

 Score =  103 bits (257), Expect = 6e-21
 Identities = 37/61 (60%), Positives = 48/61 (78%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 445
           N +RR LGSF++C++CTCCGG +  C+P+ CCYAI C  PNRPFG+CSF P +CNC GC 
Sbjct: 55  NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 114

Query: 446 L 448
           +
Sbjct: 115 I 115


>tr|Q8H130|Q8H130_ARATH Putative uncharacterized protein At1g65295
           OS=Arabidopsis thaliana GN=At1g65295 PE=4 SV=1
          Length = 115

 Score =  103 bits (257), Expect = 6e-21
 Identities = 37/61 (60%), Positives = 48/61 (78%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 445
           N +RR LGSF++C++CTCCGG +  C+P+ CCYAI C  PNRPFG+CSF P +CNC GC 
Sbjct: 55  NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 114

Query: 446 L 448
           +
Sbjct: 115 I 115


>tr|Q2HW15|Q2HW15_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC148289g12v2 PE=4 SV=1
          Length = 118

 Score =  103 bits (256), Expect = 8e-21
 Identities = 41/68 (60%), Positives = 47/68 (69%)
 Frame = +2

Query: 245 GLANQFFNTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMS 424
           G      N SRR LGSFR+CA+CTCCGG +  CI + CCYAI C  PN+PFG CSF P +
Sbjct: 51  GKMMMMMNESRRKLGSFRICAICTCCGGAKGICIASPCCYAIDCNIPNKPFGLCSFIPKA 110

Query: 425 CNCLGCRL 448
           CNC GC L
Sbjct: 111 CNCFGCHL 118


>tr|B7FHF8|B7FHF8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 119

 Score =  101 bits (252), Expect = 2e-20
 Identities = 40/61 (65%), Positives = 45/61 (73%)
 Frame = +2

Query: 266 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 445
           N SRR LGSFR CA+CTCCGG +  CI + CCYAI C  PN+PFG CSF P +CNC GC 
Sbjct: 59  NESRRKLGSFRTCAICTCCGGAKGICIASPCCYAIDCNIPNKPFGLCSFIPKACNCFGCH 118

Query: 446 L 448
           L
Sbjct: 119 L 119


>tr|B6T9L5|B6T9L5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 132

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 51/109 (46%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
 Frame = +2

Query: 140 AQPALSGGQERGALSEADQLGLLNNVTDWEIIPHPGLANQFFN------TSRRTLGSFRV 301
           A PALS         +A   G   N TD      P L   F +        RR +G F+V
Sbjct: 32  APPALS--------QQAGTGGGGGNATDSAAAWTPRLRKTFLDGGMERWRGRRLVGRFQV 83

Query: 302 CALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCRL 448
           CA+CTCCGG    CIP  CCYAI C  PNRPFG CSF P +CNCL C L
Sbjct: 84  CAVCTCCGGPHGMCIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLTCHL 132


>tr|B6T7C1|B6T7C1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 128

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 38/58 (65%), Positives = 42/58 (72%)
 Frame = +2

Query: 275 RRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCRL 448
           RR +G F+VCA+CTCCGG    CIP  CCYAI C  PNRPFG CSF P +CNCL C L
Sbjct: 71  RRLVGRFQVCAVCTCCGGPHGMCIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 128


>tr|A2WYC9|A2WYC9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04933 PE=4 SV=1
          Length = 123

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 43/73 (58%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
 Frame = +2

Query: 245 GLANQFFNTSRRTLGSFRVCALCTCCGG-----RRRFCIPTACCYAITCGSPNRPFGFCS 409
           G +    N +RR LGSF++CA CTCCGG     R   CI + CCYAI C  PNRPFGFCS
Sbjct: 51  GFSAMVLNETRRRLGSFQLCAPCTCCGGGGGGSRGGGCILSPCCYAINCNIPNRPFGFCS 110

Query: 410 FKPMSCNCLGCRL 448
           F P SC+CLGC L
Sbjct: 111 FTPKSCDCLGCNL 123