DK947662 |
Clone id |
YMU02A01NGRL0016_J19 |
Library |
YMU02 |
Length |
636 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_J19. 5' end sequence. |
Accession |
DK947662 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL163Contig1 |
Sequence |
CTACCACCACCACTACCTCTACTCCCACTGTGTCCGTAACTTCAACCACTGAAGAGACAT CTCTGCAGACAGACGAACTCATTGCGGACTTGAAAGCCAAGTGGGATGCTATTGAGAACA AGACAAATGTTTTGATTTATGGAGGAGGTGCCCTGGTCGCGTTGTGGTTTTCGTCAACAA TTGTTGGAGCTGTGAACTCAGTTCCGCTGCTTCCTAAGGTTTTGGAACTCGTTGGTCTTG GCTACAGTGGTTGGTTTGTGTACAGATACCTTCTTTTTAAGGAGAGCAGGAAGGAGCTAG CCGTGGAAATTGAGGAGCTAAAGGGTAAGATCACCGGAGCTGTGAAAGAGTAGCTGGAAA GGAGTGAAGATAATTTTCCCTTCCCCTCGCATGCTTTCTCTACAGTTTTGCTTTGTTGCT GGCCTTGTAAATACAATGGCTTGAGTTTTGTGGACCTAAGCCATGGACAGGGAACTACTG TATGTCTTGGCTCTNTAGAGTCTTTCCGTGTATCCATACTGCAAATGAGGAACATTGTGA AGATGGACCTTTATTGCAGCTCATTCTCGCATACCTAAATAACATCTTTCTGCTTTTTCA GTCGAAAGGTTTGAATGCAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O04616 |
Definition |
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana |
Align length |
93 |
Score (bit) |
148.0 |
E-value |
2.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947662|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0016_J19, 5' (618 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop... 148 2e-35 sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ... 71 4e-12 sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai... 45 4e-04 sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago... 34 0.53 sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus GN=... 32 2.0 sp|Q46VW9|MNMG_RALEJ tRNA uridine 5-carboxymethylaminomethyl mod... 31 4.5 sp|Q3TMH2|SCRN3_MOUSE Secernin-3 OS=Mus musculus GN=Scrn3 PE=2 SV=1 31 5.8 sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapien... 31 5.8 sp|Q65K13|COXX_BACLD Protoheme IX farnesyltransferase OS=Bacillu... 31 5.8 sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicu... 30 7.6 sp|P27038|AVR2A_MOUSE Activin receptor type-2A OS=Mus musculus G... 30 7.6 sp|P27037|AVR2A_HUMAN Activin receptor type-2A OS=Homo sapiens G... 30 7.6 sp|P64594|YHAV_ECOLI Uncharacterized protein yhaV OS=Escherichia... 30 9.9 sp|P64595|YHAV_ECO57 Uncharacterized protein yhaV OS=Escherichia... 30 9.9 sp|A4WRE3|COBT_RHOS5 Nicotinate-nucleotide--dimethylbenzimidazol... 30 9.9
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1 Length = 164
Score = 148 bits (374), Expect = 2e-35 Identities = 69/93 (74%), Positives = 81/93 (87%) Frame = +3
Query: 63 LQTDELIADLKAKWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLG 242 + T+ELI DLK KWD +ENK+ VLIYGGGA+VA+W SS +VGA+NSVPLLPKV+ELVGLG Sbjct: 71 IDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLG 130
Query: 243 YSGWFVYRYLLFKESRKELAVEIEELKGKITGA 341 Y+GWFVYRYLLFK SRKELA +IE LK KI G+ Sbjct: 131 YTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2 Length = 174
Score = 71.2 bits (173), Expect = 4e-12 Identities = 31/89 (34%), Positives = 56/89 (62%) Frame = +3
Query: 75 ELIADLKAKWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLGYSGW 254 E++ + W+ +++K + +VALW S+ ++ A++ +PL+P VLELVG+GY+GW Sbjct: 85 EIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144
Query: 255 FVYRYLLFKESRKELAVEIEELKGKITGA 341 F Y+ L+FK R+ L +++ I G+ Sbjct: 145 FTYKNLVFKPDREALFEKVKSTYKDILGS 173
>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=valS PE=3 SV=1 Length = 1014
Score = 44.7 bits (104), Expect = 4e-04 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3
Query: 120 KTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLELVGLGYSGWFVYRYLLFKESRKEL 299 KT L+ G LV L + + V++VP L E+VGLGYS WFV R LL +RK Sbjct: 846 KTIGLVIAG--LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRF 903
Query: 300 AVEI--EELKGKITGAVKE*LERSE 368 + + ++G V++ E +E Sbjct: 904 LAKFFAPPTEKNLSGTVQQAPEAAE 928
>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago maydis GN=DBP3 PE=3 SV=1 Length = 585
Score = 34.3 bits (77), Expect = 0.53 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3
Query: 303 VEIEELKGKITGAVKE*LERSEDNFPFPSHAFSTVLLCCWPCKYNGLSFVDLSH-GQGTT 479 V+ EL GK+ AVK+ L+ + P P A CCWP V ++ G G T Sbjct: 157 VDFRELDGKVDAAVKKTLDSQGFSTPTPIQA------CCWPVLLQNKDVVGIAETGSGKT 210
Query: 480 VCLG 491 G Sbjct: 211 FAFG 214
>sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus GN=ACVR2A PE=2 SV=1 Length = 513
Score = 32.3 bits (72), Expect = 2.0 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +2
Query: 68 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 187 DR G+ES CY ++DK CF W+ G + + CW Sbjct: 40 DRTNRTGVES---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
>sp|Q46VW9|MNMG_RALEJ tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Ralstonia eutropha (strain JMP134) GN=mnmG PE=3 SV=1 Length = 646
Score = 31.2 bits (69), Expect = 4.5 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3
Query: 99 KWDAIENKTNVLIYGGGALVALWFSSTIVGAVNSVPLLPKVLE 227 +WDA K + + L + W + TI+ A ++VPLL K +E Sbjct: 463 RWDAFNRKRDAVSRETERLKSTWVNPTILPAEDAVPLLGKPIE 505
>sp|Q3TMH2|SCRN3_MOUSE Secernin-3 OS=Mus musculus GN=Scrn3 PE=2 SV=1 Length = 418
Score = 30.8 bits (68), Expect = 5.8 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -3
Query: 550 RSIFTMFLICS-----MDTRKDSXEPRHTVVPCPWLRSTKLKPLYLQGQQQSKTVEKACE 386 RS+F F+ +DT+ + EP V P+++ + PLY + Q+ + + + E Sbjct: 304 RSVFKPFIFVPHISPLLDTKSPTFEPERPVAKKPYVKPDRRHPLYQKHQEALEMISNSKE 363
Query: 385 GKGK 374 KGK Sbjct: 364 -KGK 366
>sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapiens GN=GOLGA3 PE=1 SV=2 Length = 1498
Score = 30.8 bits (68), Expect = 5.8 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +3
Query: 216 KVLELVG-LGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 338 KVLEL L S F + +ES K+LA+E+E KGK+TG Sbjct: 1082 KVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTG 1123
>sp|Q65K13|COXX_BACLD Protoheme IX farnesyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ctaB PE=3 SV=1 Length = 308
Score = 30.8 bits (68), Expect = 5.8 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = +3
Query: 159 ALWFSSTIVGAVNSVPLLPKVLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 338 ALWF ++ A+ + LL L G+G+ G F Y +L S++ V + G ++G Sbjct: 110 ALWFG-ILLTALGFIMLLMTNLTAAGVGFVGVFTYVFLYTMWSKRRYTV--NTIIGSVSG 166
Query: 339 AV 344 AV Sbjct: 167 AV 168
>sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicus GN=Acvr2a PE=1 SV=1 Length = 513
Score = 30.4 bits (67), Expect = 7.6 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +2
Query: 68 DRRTHCGLESQVGCY*EQDK---CFDLWRRCPGRVVVFVNNCW 187 DR G+E CY ++DK CF W+ G + + CW Sbjct: 40 DRTNQTGVEP---CYGDKDKRRHCFATWKNISGSIEIVKQGCW 79
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S558 |
Definition |
tr|A9S558|A9S558_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
91 |
Score (bit) |
153.0 |
E-value |
9.0e-36 |
Report |
|