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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947682
Clone id YMU02A01NGRL0016_K20
Library
Length 253
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_K20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCAATGATT
GCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTCTTCCATGTCT
CACCTATTGCCTTGTATATTCTGACAGTCATGAGAATGAAAAAGTGTAGCTCCTTGTGAA
TTGCAATTTAGTTATTTGCATGTAATCAAGACCTTTTGCGTCGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P06183
Definition sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum
Align length 17
Score (bit) 33.1
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947682|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_K20, 5'
         (223 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    33   0.43 
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    33   0.43 
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    33   0.43 
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    33   0.43 
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    32   0.74 
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    32   1.3  
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    31   1.7  
sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa...    31   1.7  
sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=...    29   8.2  

>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 122 ILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 122 ILAGGALLVYNTSALAQ 138


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 125 ILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 124 ILAGGALLVYNTSALAQ 140


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           +L GGALLVYNTSALAQ
Sbjct: 124 LLAGGALLVYNTSALAQ 140


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLV+NTSALAQ
Sbjct: 120 ILAGGALLVFNTSALAQ 136


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALA 52
           ILLGGALLVY+TSALA
Sbjct: 122 ILLGGALLVYSTSALA 137


>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1
          Length = 686

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 179 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 90
           SQG+ L+HS D   I  N+ D +DA  VR+
Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679


>sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 573

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -1

Query: 175 KELHFFILMTVRIYKAIGETWKTHSVSEFRIHLIN 71
           K+++ ++L T  + + + + WKTH +S+  I L++
Sbjct: 158 KQIYLYVLRTHNLEEKVFKVWKTHILSDCSIALLH 192
tr_hit_id A1XX43
Definition tr|A1XX43|A1XX43_9MAGN Chloroplast photosystem II light-inducible protein OS=Pachysandra terminalis
Align length 18
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947682|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_K20, 5'
         (223 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1XX43|A1XX43_9MAGN Chloroplast photosystem II light-inducibl...    35   2.5  
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    34   3.2  
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    33   7.1  
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    33   7.1  
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    33   7.1  
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    33   7.1  
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    33   7.1  
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    33   7.1  

>tr|A1XX43|A1XX43_9MAGN Chloroplast photosystem II light-inducible
           protein OS=Pachysandra terminalis GN=ST-LS1 PE=2 SV=1
          Length = 138

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 2   AILLGGALLVYNTSALAQ 55
           A+LLGGALLVYNTSAL+Q
Sbjct: 121 ALLLGGALLVYNTSALSQ 138


>tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromosome
           chr19 scaffold_35, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00025803001 PE=4 SV=1
          Length = 139

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           +LLGGALLVYNTSALAQ
Sbjct: 123 LLLGGALLVYNTSALAQ 139


>tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide,
           chloroplast OS=Salmo salar GN=PSBR PE=2 SV=1
          Length = 138

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALA 52
           ILLGGALLVYNTSALA
Sbjct: 122 ILLGGALLVYNTSALA 137


>tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragment)
           OS=Brassica rapa subsp. pekinensis PE=2 SV=1
          Length = 137

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 121 ILAGGALLVYNTSALAQ 137


>tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana
           GN=At1g79040 PE=2 SV=1
          Length = 140

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 124 ILAGGALLVYNTSALAQ 140


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
           SV=1
          Length = 141

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 125 ILAGGALLVYNTSALAQ 141


>tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide
           OS=Brassica campestris PE=2 SV=1
          Length = 140

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 124 ILAGGALLVYNTSALAQ 140


>tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa
           polypeptide OS=Brassica campestris PE=4 SV=1
          Length = 82

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 5   ILLGGALLVYNTSALAQ 55
           IL GGALLVYNTSALAQ
Sbjct: 66  ILAGGALLVYNTSALAQ 82