DK947687
Clone id YMU02A01NGRL0016_L01
Library
Length 326
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTTTTTGGATTGTGGCTACTAGTGTTTGGCTCAAATATGAGTGGTCAGTGCCATACGTTT
GGTGCATTCGTAGTCCTTGGTTGAATATCGATTTTTTTGGATACATGGAACAGTTCTAAG
CATTTAGTCTAAACAGCTTCTCGCAGAAATGGGAGAAGTTGGTATTTACTCAGTACCTAA
TTTTACTAGCTTCCATTTGCCTCGAAGGGGCTTCCATGGTCTTAGCTGCGTAACCCGACT
GCCATGTGCAGGCTGTTGGAATAAATTTGTATCTATGGAATTCATAACAGAGCACGTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6FYL6
Definition sp|Q6FYL6|SYL_BARQU Leucyl-tRNA synthetase OS=Bartonella quintana
Align length 33
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L01, 5'
(298 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6FYL6|SYL_BARQU Leucyl-tRNA synthetase OS=Bartonella quintan... 32 1.3
sp|A9IYY8|SYL_BART1 Leucyl-tRNA synthetase OS=Bartonella triboco... 31 1.7
sp|Q6G1W2|SYL_BARHE Leucyl-tRNA synthetase OS=Bartonella hensela... 29 8.4
sp|P53253|NNF2_YEAST Protein NNF2 OS=Saccharomyces cerevisiae GN... 29 8.4
sp|Q9D6K9|LASS5_MOUSE LAG1 longevity assurance homolog 5 OS=Mus ... 29 8.5

>sp|Q6FYL6|SYL_BARQU Leucyl-tRNA synthetase OS=Bartonella quintana
GN=leuS PE=3 SV=1
Length = 880

Score = 31.6 bits (70), Expect = 1.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1

Query: 100 PKKSIFNQGLRMHQTYGTDHSYLSQTLVATIQK 2
P K +F QG+ +H+TY D ++S ++ I+K
Sbjct: 584 PFKGLFTQGMVVHETYRDDQGWVSPAEISIIEK 616


>sp|A9IYY8|SYL_BART1 Leucyl-tRNA synthetase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=leuS PE=3 SV=1
Length = 886

Score = 31.2 bits (69), Expect = 1.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1

Query: 100 PKKSIFNQGLRMHQTYGTDHSYLSQTLVATIQK 2
P K +F QG+ +H+TY D ++S ++ ++K
Sbjct: 590 PFKGLFTQGMVVHETYRDDQGWVSPAEISIVEK 622


>sp|Q6G1W2|SYL_BARHE Leucyl-tRNA synthetase OS=Bartonella henselae
GN=leuS PE=3 SV=1
Length = 880

Score = 28.9 bits (63), Expect = 8.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1

Query: 100 PKKSIFNQGLRMHQTYGTDHSYLSQTLVATIQK 2
P K +F QG+ +H+TY + ++S ++ ++K
Sbjct: 584 PFKGLFTQGMVVHETYRDEKDWVSPEEISIVEK 616


>sp|P53253|NNF2_YEAST Protein NNF2 OS=Saccharomyces cerevisiae
GN=NNF2 PE=1 SV=1
Length = 936

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2

Query: 297 TCSVMNSIDTNLFQQPAHGSRVTQLRPWKPLRGKWKLVKLGT 172
+CSV+ ++ TN FQ+ +H + QL LRG + +KL T
Sbjct: 175 SCSVLYAVSTNTFQRVSHFFDIIQLFDMS-LRGTGQSIKLFT 215


>sp|Q9D6K9|LASS5_MOUSE LAG1 longevity assurance homolog 5 OS=Mus
musculus GN=Lass5 PE=1 SV=1
Length = 414

Score = 28.9 bits (63), Expect = 8.5
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +3

Query: 30 LKYEWSVPYVWCIRSPWLNIDFFGYMEQF*AFSLNSFSQKWEKLVFTQYL 179
+++ WS+P+ W R W N + + + + + W L+F+Q++
Sbjct: 159 IRFLWSMPWFWDTRQCWYNYPYQPLSRELYYYYITQLAFYW-SLMFSQFI 207


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L01, 5'
(298 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******