DK947688 |
Clone id |
YMU02A01NGRL0016_L02 |
Library |
YMU02 |
Length |
481 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L02. 5' end sequence. |
Accession |
DK947688 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1888Contig1 |
Sequence |
GTGCGCAGACTTATTTTGCCCGCTGCTGCACTGCGAGGAGGAGCCTCGTATCGGAAGATG CAAAATGGAGAGAGGGAGATAACGTGTATCTGTACATCCCCGGGAAGTGCTCAGCTTCAA ATCGCTTGATAACTGCAAAGGATCATGCATCAGTGCAGTTGAACATTGGGCATTTGGATG AAAATGGCCTTTACACCGGCCAATTTACCACATTTGCCTTGTCTGGGTTTGTCCGAGCTC ACGGGGATGCGGATAGTGCTTTTGATCGGCTTTGGCAGAAACAGAGGGCAAAAATTGGGC AGTAACTGTAGTGGGCAAGCCCTTACTCTTTATTAATGTTGGTCTCTATGAGCAAAAGGA TTTTATAACAAATGACTTTTCAAGCTGCATTTGTGAAAGCTCAACAAGTTTGTAATTTGA AGACTCGTCTCTGCTACACTCCAGTGAAGTGCCTTCAATTTAAAAGTGTTTTTGATTTTT T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35687 |
Definition |
sp|P35687|RS21_ORYSJ 40S ribosomal protein S21 OS=Oryza sativa subsp. japonica |
Align length |
77 |
Score (bit) |
127.0 |
E-value |
3.0e-29 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NJY4 |
Definition |
tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
77 |
Score (bit) |
135.0 |
E-value |
1.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947688|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0016_L02, 5' (481 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea... 135 1e-30 tr|A9NY16|A9NY16_PICSI Putative uncharacterized protein OS=Picea... 133 4e-30 tr|A9TQC7|A9TQC7_PHYPA Predicted protein OS=Physcomitrella paten... 131 1e-29 tr|A9TSH2|A9TSH2_PHYPA Predicted protein OS=Physcomitrella paten... 129 7e-29 tr|A9RI12|A9RI12_PHYPA Predicted protein OS=Physcomitrella paten... 129 9e-29 tr|A5B0Z2|A5B0Z2_VITVI Putative uncharacterized protein OS=Vitis... 128 1e-28 tr|Q10LK3|Q10LK3_ORYSJ Os03g0345200 protein OS=Oryza sativa subs... 127 3e-28 tr|B8APE8|B8APE8_ORYSI Putative uncharacterized protein OS=Oryza... 127 3e-28 tr|Q7Y199|Q7Y199_ORYSJ 40S subunit ribosomal protein OS=Oryza sa... 125 8e-28 tr|B6TXC9|B6TXC9_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 125 8e-28 tr|B6SPN3|B6SPN3_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 125 1e-27 tr|B6SH48|B6SH48_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 125 1e-27 tr|A5BUA6|A5BUA6_VITVI Putative uncharacterized protein (Chromos... 125 1e-27 tr|Q60DM0|Q60DM0_ORYSJ Os03g0667800 protein OS=Oryza sativa subs... 124 2e-27 tr|B8AP26|B8AP26_ORYSI Putative uncharacterized protein OS=Oryza... 124 2e-27 tr|B4FDE3|B4FDE3_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 123 4e-27 tr|A9PC55|A9PC55_POPTR Putative uncharacterized protein OS=Popul... 123 4e-27 tr|Q2HVJ1|Q2HVJ1_MEDTR Ribosomal protein S21e OS=Medicago trunca... 122 7e-27 tr|A9PC23|A9PC23_POPTR Putative uncharacterized protein OS=Popul... 122 9e-27 tr|Q8LCB7|Q8LCB7_ARATH 40S ribosomal protein S21 homolog OS=Arab... 120 3e-26 tr|P93626|P93626_MAIZE 40S ribosomal subunit protein S21 OS=Zea ... 119 6e-26 tr|B7FGU9|B7FGU9_MEDTR Putative uncharacterized protein OS=Medic... 117 2e-25 tr|A4S8E0|A4S8E0_OSTLU Ribosomal protein S21, component of cytos... 110 3e-23 tr|A9SFC5|A9SFC5_PHYPA Predicted protein (Fragment) OS=Physcomit... 107 3e-22 tr|A9NU05|A9NU05_PICSI Putative uncharacterized protein OS=Picea... 104 2e-21 tr|A8IXG3|A8IXG3_CHLRE Ribosomal protein S21 OS=Chlamydomonas re... 101 2e-20 tr|A7Q4R9|A7Q4R9_VITVI Chromosome chr10 scaffold_50, whole genom... 99 8e-20 tr|Q10LK2|Q10LK2_ORYSJ 40S ribosomal protein S21, putative, expr... 97 5e-19 tr|A3E3H7|A3E3H7_PFIPI 40S ribosomal protein OS=Pfiesteria pisci... 96 1e-18 tr|B6HC25|B6HC25_PENCH Pc18g05330 protein OS=Penicillium chrysog... 95 2e-18
>tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 81
Score = 135 bits (339), Expect = 1e-30 Identities = 62/77 (80%), Positives = 70/77 (90%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG N+ LYIP KCSA+NRLIT+KDHASVQLNIGHLDENG+YTGQFTTFALSGFVRA GDA Sbjct: 5 EGQNIDLYIPRKCSATNRLITSKDHASVQLNIGHLDENGIYTGQFTTFALSGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DS DRLWQK++ ++GQ Sbjct: 65 DSGIDRLWQKKKVELGQ 81
>tr|A9NY16|A9NY16_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 81
Score = 133 bits (335), Expect = 4e-30 Identities = 61/77 (79%), Positives = 69/77 (89%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG N+ LYIP KCS +NRLIT+KDHASVQLNIGHLDENG+YTGQFTTFALSGFVRA GDA Sbjct: 5 EGQNIDLYIPRKCSTTNRLITSKDHASVQLNIGHLDENGIYTGQFTTFALSGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DS DRLWQK++ ++GQ Sbjct: 65 DSGIDRLWQKKKVELGQ 81
>tr|A9TQC7|A9TQC7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108579 PE=4 SV=1 Length = 81
Score = 131 bits (330), Expect = 1e-29 Identities = 61/77 (79%), Positives = 71/77 (92%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EGDNV LYIP KCS++NRLIT+KD ASVQLN+GH+DENG+YTGQFTTFAL GFVRA GDA Sbjct: 5 EGDNVDLYIPRKCSSTNRLITSKDVASVQLNVGHVDENGVYTGQFTTFALCGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSAFDRLW K++A++GQ Sbjct: 65 DSAFDRLWAKKKAELGQ 81
>tr|A9TSH2|A9TSH2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199482 PE=4 SV=1 Length = 81
Score = 129 bits (324), Expect = 7e-29 Identities = 60/77 (77%), Positives = 70/77 (90%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EGDNV LYIP KCS++NRLIT+KD ASVQLN+GH+DENG+YTGQFTTFAL GFVRA GDA Sbjct: 5 EGDNVDLYIPRKCSSTNRLITSKDVASVQLNVGHVDENGVYTGQFTTFALCGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLW K++A++GQ Sbjct: 65 DSALDRLWAKKKAELGQ 81
>tr|A9RI12|A9RI12_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_55336 PE=4 SV=1 Length = 81
Score = 129 bits (323), Expect = 9e-29 Identities = 60/77 (77%), Positives = 70/77 (90%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG+NV LYIP KCS++NRLIT+KD ASVQLN+GHLDENG+YTGQFTTFAL GFVRA GDA Sbjct: 5 EGENVDLYIPRKCSSTNRLITSKDVASVQLNVGHLDENGVYTGQFTTFALCGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLW K++A++GQ Sbjct: 65 DSALDRLWAKKKAELGQ 81
>tr|A5B0Z2|A5B0Z2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033219 PE=4 SV=1 Length = 82
Score = 128 bits (322), Expect = 1e-28 Identities = 59/77 (76%), Positives = 69/77 (89%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG N+ LYIP KCSA+NRLIT+KDHASVQ+N+GHLDE+G YTGQFTTFAL GFVRA GDA Sbjct: 5 EGQNMDLYIPRKCSATNRLITSKDHASVQINVGHLDESGTYTGQFTTFALCGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLWQK++A++ Q Sbjct: 65 DSALDRLWQKKKAEVRQ 81
>tr|Q10LK3|Q10LK3_ORYSJ Os03g0345200 protein OS=Oryza sativa subsp. japonica GN=Os03g0345200 PE=4 SV=1 Length = 82
Score = 127 bits (319), Expect = 3e-28 Identities = 58/77 (75%), Positives = 69/77 (89%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG V LY+P KCSA+NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA GDA Sbjct: 5 EGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLWQK++A++ Q Sbjct: 65 DSALDRLWQKRKAEVKQ 81
>tr|B8APE8|B8APE8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11539 PE=4 SV=1 Length = 123
Score = 127 bits (319), Expect = 3e-28 Identities = 58/77 (75%), Positives = 69/77 (89%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG V LY+P KCSA+NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA GDA Sbjct: 46 EGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDA 105
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLWQK++A++ Q Sbjct: 106 DSALDRLWQKRKAEVKQ 122
>tr|Q7Y199|Q7Y199_ORYSJ 40S subunit ribosomal protein OS=Oryza sativa subsp. japonica GN=OSJNBa0039O18.25 PE=4 SV=1 Length = 82
Score = 125 bits (315), Expect = 8e-28 Identities = 57/77 (74%), Positives = 68/77 (88%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG V LY+P KCS +NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA GDA Sbjct: 5 EGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DSA DRLWQK++A++ Q Sbjct: 65 DSALDRLWQKRKAEVKQ 81
>tr|B6TXC9|B6TXC9_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=4 SV=1 Length = 81
Score = 125 bits (315), Expect = 8e-28 Identities = 59/77 (76%), Positives = 67/77 (87%) Frame = +3
Query: 72 EGDNVYLYIPGKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRAHGDA 251 EG V LY+P KCSA+NR+ITAKDHASVQ+NIGHLD NGLY G FTTFALSGFVRA GDA Sbjct: 5 EGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDA 64
Query: 252 DSAFDRLWQKQRAKIGQ 302 DS+ DRLWQK++A+I Q Sbjct: 65 DSSLDRLWQKKKAEIKQ 81
|