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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947694
Clone id YMU02A01NGRL0016_L12
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATAGCAGAGGTGAAGAGAAAGTACACAGTTGGAAATGTGCTCTTGGACAAGCACACATT
CAGTGTTGTGGTCTTCCCTAATGTGGACCAAGCTTTTGTGGCAGCTCTTGTGATCATCAT
GGACCGTATCCATGAGGACTAGATGGCTTTGACAGCCCCGCATGAGCAAGCCCGCCCTTC
GTCTTCATCCTGTCCTGCCACCATCTACCTAAGGATGTCCCCTTGTTTTTGCATAAGCAT
TCCTTCACCGCCATATCCATCTTTCTGTTTGTGGTTTCCATTGCAAGTAGCTTAGTTTGT
AAGTTTGACCCCTAGTCAAGGTAACTGGTTTTTGTTACATCATTTTGCTTTGCTTTTCTT
GAAGCTGCCTTTTTGGTGGTCCTCCAATGCAATGCTCTTATATCCCGAATGTGGAGTGTA
AATTGCACGATTAAATATGGAAACTTCCATTTCAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id Q9LZX1
Definition sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis thaliana
Align length 46
Score (bit) 53.9
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947694|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L12, 5'
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis t...    54   3e-07
sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig...    33   0.76 
sp|Q9BYQ2|KRA94_HUMAN Keratin-associated protein 9-4 OS=Homo sap...    33   0.77 
sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 OS=Homo sap...    30   3.8  
sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 OS=Homo sap...    30   3.8  
sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-li...    30   3.8  
sp|A5A6P5|KRA92_PANTR Keratin-associated protein 9-2 OS=Pan trog...    30   6.6  
sp|Q54DK0|Y9625_DICDI Putative leucine-rich repeat-containing pr...    29   8.4  
sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus ...    29   8.6  
sp|A8MTY7|KR921_HUMAN Putative keratin-associated protein 9-2-li...    29   8.6  

>sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis
           thaliana GN=At5g01750 PE=1 SV=1
          Length = 217

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 23/46 (50%), Positives = 36/46 (78%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           +A++ RK+TV +V L K  FSV V+PNVD AF+A+LV+I+D ++ +
Sbjct: 168 VAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE 213


>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1 PE=1
             SV=2
          Length = 13100

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35    NVLLDKHTFSVVVFPN--VDQAFVAALVIIMDRIHED*MALTAPHEQARPSSSSC 193
             N L   HT++V V  N  VD +   A+    D +H D    TAP +  +PS SSC
Sbjct: 12875 NELPSDHTYTVCVMTNERVDNSTALAIDKNCDSLHID-QNTTAPEDYVKPSPSSC 12928


>sp|Q9BYQ2|KRA94_HUMAN Keratin-associated protein 9-4 OS=Homo
           sapiens GN=KRTAP9-4 PE=2 SV=1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 37  CALGQAHIQCCGLP*CGPSFCGSSCD 114
           C        CC  P C P+ CGSSCD
Sbjct: 66  CVTSCCQPSCCSTPCCQPTCCGSSCD 91


>sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 OS=Homo
           sapiens GN=KRTAP9-3 PE=1 SV=1
          Length = 159

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 37  CALGQAHIQCCGLP*CGPSFCGSSC 111
           C        CC  P C P+ CGSSC
Sbjct: 66  CVTSCCQPSCCSTPCCQPTCCGSSC 90


>sp|Q9BYQ4|KRA92_HUMAN Keratin-associated protein 9-2 OS=Homo
           sapiens GN=KRTAP9-2 PE=1 SV=2
          Length = 174

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 37  CALGQAHIQCCGLP*CGPSFCGSSC 111
           C        CC  P C P+ CGSSC
Sbjct: 71  CVTSCCQPSCCSTPCCQPTCCGSSC 95


>sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-like
           3 OS=Homo sapiens PE=3 SV=1
          Length = 250

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 37  CALGQAHIQCCGLP*CGPSFCGSSC 111
           C        CC  P C P+ CGSSC
Sbjct: 71  CVASCCQPSCCSTPCCQPTCCGSSC 95


>sp|A5A6P5|KRA92_PANTR Keratin-associated protein 9-2 OS=Pan
           troglodytes GN=KRTAP9-2 PE=2 SV=1
          Length = 170

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 64  CCGLP*CGPSFCGSSC 111
           CC  P C P+ CGSSC
Sbjct: 80  CCSTPCCQPTCCGSSC 95


>sp|Q54DK0|Y9625_DICDI Putative leucine-rich repeat-containing
           protein DDB_G0292252 OS=Dictyostelium discoideum
           GN=DDB_G0292252 PE=4 SV=1
          Length = 1256

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 15  RESTQLEMCSWTSTHSVLWSSLMW 86
           ++S +L++CS  +TH+V W +L++
Sbjct: 70  QQSIELKLCSSVNTHNVFWDTLLY 93


>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus
            GN=Slit3 PE=2 SV=1
          Length = 1523

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 28   SWKCALGQAHIQCCGLP--*CGPSFCGSSCDHHGP 126
            ++KC  GQ HI   G P   C P F G+ C+   P
Sbjct: 1414 AFKCHHGQCHISDRGEPYCLCQPGFSGNHCEQENP 1448


>sp|A8MTY7|KR921_HUMAN Putative keratin-associated protein 9-2-like
           1 OS=Homo sapiens PE=3 SV=1
          Length = 169

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 37  CALGQAHIQCCGLP*CGPSFCGSSC 111
           C        CC  P C P  CGSSC
Sbjct: 66  CVTSCCQPSCCSTPCCQPICCGSSC 90
tr_hit_id B6T7N7
Definition tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 46
Score (bit) 59.3
E-value 9.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947694|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L12, 5'
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea m...    59   9e-08
tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea m...    59   9e-08
tr|A9NZT7|A9NZT7_PICSI Putative uncharacterized protein OS=Picea...    58   2e-07
tr|A9NL98|A9NL98_PICSI Putative uncharacterized protein OS=Picea...    58   2e-07
tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome...    55   2e-06
tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subs...    54   4e-06
tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A7QFJ1|A7QFJ1_VITVI Chromosome chr8 scaffold_88, whole genome...    52   2e-05
tr|B6TXU6|B6TXU6_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|Q9SF24|Q9SF24_ARATH F26K24.3 protein OS=Arabidopsis thaliana ...    49   1e-04
tr|A9T2I3|A9T2I3_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A9S6M4|A9S6M4_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|Q10BI2|Q10BI2_ORYSJ Os03g0816800 protein OS=Oryza sativa subs...    46   0.001
tr|Q84TW5|Q84TW5_ORYSJ Putative uncharacterized protein OSJNBa00...    45   0.002
tr|A9T0M4|A9T0M4_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|B8AMA3|B8AMA3_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A9NZ78|A9NZ78_PICSI Putative uncharacterized protein OS=Picea...    41   0.026
tr|Q9LQ36|Q9LQ36_ARATH F14M2.3 protein OS=Arabidopsis thaliana G...    40   0.044
tr|A9SW48|A9SW48_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.044
tr|A9T2I4|A9T2I4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|B8LPH7|B8LPH7_PICSI Putative uncharacterized protein OS=Picea...    37   0.38 
tr|A9NZY9|A9NZY9_PICSI Putative uncharacterized protein OS=Picea...    37   0.49 
tr|A7QIT6|A7QIT6_VITVI Chromosome chr2 scaffold_105, whole genom...    37   0.49 
tr|A5C6C1|A5C6C1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|A5B4Z1|A5B4Z1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|A7QIT7|A7QIT7_VITVI Chromosome chr2 scaffold_105, whole genom...    37   0.64 
tr|A7QIT5|A7QIT5_VITVI Chromosome chr2 scaffold_105, whole genom...    37   0.64 
tr|Q10LK9|Q10LK9_ORYSJ Eukaryotic translation initiation factor ...    36   0.84 
tr|A2XGL2|A2XGL2_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 

>tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 210

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ R++TV NVLL + TF V VFP+VD  FVAALV+I+D IH +
Sbjct: 162 IAQMNRQFTVTNVLLGRDTFGVTVFPHVDYVFVAALVVILDEIHRE 207


>tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 207

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ R++TV NVLL + TF V VFP+VD  FVAALV+I+D IH +
Sbjct: 159 IAQMNRQFTVTNVLLGRDTFGVTVFPHVDYVFVAALVVILDEIHRE 204


>tr|A9NZT7|A9NZT7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 222

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 25/46 (54%), Positives = 37/46 (80%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IAE++RKYTV  VL+ + TF+V V+P VD AF+ ALV+I+D I+++
Sbjct: 167 IAEMRRKYTVSQVLMGRDTFTVTVYPGVDYAFIVALVVILDEINKE 212


>tr|A9NL98|A9NL98_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 222

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 25/46 (54%), Positives = 37/46 (80%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IAE++RKYTV  VL+ + TF+V V+P VD AF+ ALV+I+D I+++
Sbjct: 167 IAEMRRKYTVSQVLMGRDTFTVTVYPGVDYAFIVALVVILDEINKE 212


>tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037442001
           PE=4 SV=1
          Length = 216

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 23/46 (50%), Positives = 37/46 (80%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ +K+ V +V+L K TF+V V+PNVD AF+ AL++I+D I++D
Sbjct: 168 IAQMHKKHNVQSVVLGKDTFAVTVYPNVDYAFIVALIVILDEINDD 213


>tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0086N05.106 PE=2 SV=1
          Length = 214

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ RK+T  +V+L +  FS+ VFP VD  F+AALV I+D +H D
Sbjct: 166 IAQMNRKHTAASVVLGRDVFSITVFPQVDYVFIAALVAILDDVHRD 211


>tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022673 PE=4 SV=1
          Length = 201

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ RK+T  +V+L +  FS+ VFP VD  F+AALV I+D +H D
Sbjct: 153 IAQMNRKHTAASVVLGRDVFSITVFPQVDYVFIAALVAILDDVHRD 198


>tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25434 PE=4 SV=1
          Length = 201

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ RK+T  +V+L +  FS+ VFP VD  F+AALV I+D +H D
Sbjct: 153 IAQMNRKHTAASVVLGRDVFSITVFPQVDYVFIAALVAILDDVHRD 198


>tr|A7QFJ1|A7QFJ1_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037441001
           PE=4 SV=1
          Length = 213

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 36/46 (78%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIHED 139
           IA++ +KY V +V+L K TF+V V+ NVD AF+ AL++I++ I++D
Sbjct: 168 IAKMHKKYNVQSVVLGKDTFAVTVYTNVDYAFIVALIVILEEINKD 213


>tr|B6TXU6|B6TXU6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 200

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 34/44 (77%)
 Frame = +2

Query: 2   IAEVKRKYTVGNVLLDKHTFSVVVFPNVDQAFVAALVIIMDRIH 133
           IA++ R+++V + LL K+++SV V P +D AFV ALV+I+D IH
Sbjct: 154 IAKIDRRFSVVSALLGKNSYSVTVNPGIDYAFVVALVVILDEIH 197