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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947701
Clone id YMU02A01NGRL0016_L20
Library
Length 258
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGTCATTACGGCCGGGGGGAGAGTGATGAGGGCTTC
GTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGA
AGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAAC
CAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCC
GAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947701|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L20, 5'
         (186 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   4.8  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   4.8  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   4.8  

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 155
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 155
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 3   ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 107
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 49
Score (bit) 81.3
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947701|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L20, 5'
         (186 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    81   2e-14
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    67   4e-10
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            50   6e-05
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    49   1e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    48   2e-04
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    44   3e-04
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.004
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    42   0.015
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    42   0.015
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    42   0.015
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    42   0.020
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    42   0.020
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    42   0.020
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    42   0.020
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    42   0.020
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    41   0.035
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    40   0.045
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    40   0.059
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    39   0.10 
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    39   0.13 
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    39   0.17 
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    38   0.29 
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin...    38   0.29 
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    37   0.50 
tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin...    37   0.50 
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    37   0.65 
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    36   1.1  

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 185
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 71


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 185
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 77


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 185
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 80


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 185
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 75


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +3

Query: 60  GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 185
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 42


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = -2

Query: 185 IGHSGIFSLTRWSSLVHTGFCVPHATWVGA 96
           IGH G+FSL RWS L+HTGF VPHAT V A
Sbjct: 15  IGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = +3

Query: 3   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 146
           ES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +3

Query: 3   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 146
           ES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 43.5 bits (101), Expect(2) = 3e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -2

Query: 185 IGHSGIFSLTRWSSLVHTGFCVPHAT 108
           I H  +FSL RWS L+HTGF VPHAT
Sbjct: 247 ISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 23.9 bits (50), Expect(2) = 3e-04
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 91  LAVLPATGLSPSGVQH 44
           L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
           OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
           SV=1
          Length = 1546

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 176 SGIFSLTRWSSLVHTGFCVPHAT 108
           SG+FSL RWS L+HTGF VPHAT
Sbjct: 666 SGVFSLARWSLLIHTGFHVPHAT 688