DK947702
Clone id YMU02A01NGRL0016_L21
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CTTTGCAAGGTGGTTTCGAACTCCACAGAGTAGCTATGGCCAAGTCGAAGAACCACACCG
CCCACAATCAGTCTTACAAAGCGCACAAGAATGGAATCAAGAAGGCCAAGAAGCACAAGT
ACACTTCAAGGAAGGGGATGGACCCTAAGTTTCTACGGAATCAGAGATACGCAAAGAAAC
ACAATCGAGTTGGTGGTGCTGATGCAGGATCCGACTCCTGTGCTGAAGAGTAAATTGGAG
TAGTTACCCGGCATATATGTGGCTCTTGTAATGAGCAGAGAGATGGCTGCCAAGCCTCTC
TACCTCCCAATGTCGCTCTGACTGGGGACCTTTTTGATAATTCTTAATTTGCATCGTGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q84WM0
Definition sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis thaliana
Align length 58
Score (bit) 67.4
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L21, 5'
(359 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis... 67 2e-11
sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis... 67 4e-11
sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicu... 62 7e-10
sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RP... 62 7e-10
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus G... 62 7e-10
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicu... 62 7e-10
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens G... 62 7e-10
sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=... 62 7e-10
sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces ... 47 2e-05
sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila mel... 47 2e-05
sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 OS=Schizosaccharo... 41 0.002
sp|Q54TW3|RL29_DICDI 60S ribosomal protein L29 OS=Dictyostelium ... 38 0.014
sp|Q5VUA4|ZN318_HUMAN Zinc finger protein 318 OS=Homo sapiens GN... 30 4.9
sp|P33191|TUB8_SOLTU Induced stolen tip protein TUB8 (Fragment) ... 30 4.9
sp|Q7SZC5|NDC1_DANRE Nucleoporin NDC1 OS=Danio rerio GN=tmem48 P... 30 4.9
sp|Q6NHF7|PPNK_CORDI Probable inorganic polyphosphate/ATP-NAD ki... 29 6.5
sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus mus... 29 6.5
sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sa... 29 6.5
sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos tau... 29 6.5
sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN ... 29 6.5

>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis
thaliana GN=RPL29B PE=2 SV=2
Length = 61

Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAG 209
MAKSKNHTAHNQS +T +GMDPKFLRNQRYA+KHN G +AG
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAG 58


>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis
thaliana GN=RPL29A PE=2 SV=1
Length = 61

Score = 66.6 bits (161), Expect = 4e-11
Identities = 35/65 (53%), Positives = 40/65 (61%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
MAKSKNHTAHNQS +T +GMDPKFLRNQRYA+KHN AG +
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN----VKAGEN 56

Query: 216 SCAEE 230
+ AEE
Sbjct: 57 ASAEE 61


>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus
GN=Rpl29 PE=1 SV=3
Length = 156

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RPL29
PE=2 SV=4
Length = 160

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus
GN=Rpl29 PE=2 SV=2
Length = 160

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca
fascicularis GN=RPL29 PE=2 SV=3
Length = 157

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens
GN=RPL29 PE=1 SV=2
Length = 159

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus
GN=RPL29 PE=2 SV=3
Length = 152

Score = 62.4 bits (150), Expect = 7e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
MAKSKNHT HNQS Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces
cerevisiae GN=RPL29 PE=1 SV=3
Length = 59

Score = 47.4 bits (111), Expect = 2e-05
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYA 173
MAKSKNHTAHNQ+ Y S KG+DPKF RN ++A
Sbjct: 1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46


>sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila
melanogaster GN=RpL29 PE=1 SV=1
Length = 76

Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHN 185
MAKSKNHT HNQ+ + S GMD KFL NQRYA+K N
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50


tr_hit_id A9S9C3
Definition tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 80.5
E-value 4.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L21, 5'
(359 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella paten... 80 4e-14
tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea... 80 5e-14
tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella paten... 78 2e-13
tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella paten... 78 3e-13
tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromos... 71 2e-11
tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Popul... 70 4e-11
tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromos... 70 4e-11
tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subs... 70 7e-11
tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza... 70 7e-11
tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng GN... 69 2e-10
tr|A9P870|A9P870_POPTR Putative uncharacterized protein OS=Popul... 69 2e-10
tr|Q9FR31|Q9FR31_SOLLC Ripening regulated protein DDTFR19 OS=Sol... 68 2e-10
tr|Q0WTD2|Q0WTD2_ARATH Putative ribosomal protein L29 OS=Arabido... 66 1e-09
tr|A8IX67|A8IX67_CHLRE Ribosomal protein L29 OS=Chlamydomonas re... 65 2e-09
tr|B6T5X5|B6T5X5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 63 6e-09
tr|Q7SZA5|Q7SZA5_XENLA MGC64312 protein OS=Xenopus laevis PE=4 SV=1 62 1e-08
tr|Q6DGL4|Q6DGL4_DANRE Zgc:92868 OS=Danio rerio GN=zgc:92868 PE=... 62 1e-08
tr|A9ZTA8|A9ZTA8_SOLSE Ribosomal protein L29 OS=Solea senegalens... 62 1e-08
tr|A9UMU7|A9UMU7_XENTR LOC100135409 protein OS=Xenopus tropicali... 62 1e-08
tr|Q5M8M8|Q5M8M8_MOUSE Putative uncharacterized protein OS=Mus m... 62 1e-08
tr|B6U0G5|B6U0G5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 1e-08
tr|Q6IPI1|Q6IPI1_HUMAN Ribosomal protein L29 OS=Homo sapiens GN=... 62 1e-08
tr|Q5T1D1|Q5T1D1_HUMAN Ribosomal protein L29 (RPL29) pseudogene ... 62 1e-08
tr|Q90YT8|Q90YT8_ICTPU Ribosomal protein L29 OS=Ictalurus puncta... 62 1e-08
tr|B6TL28|B6TL28_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 1e-08
tr|Q66KW1|Q66KW1_XENLA MGC85384 protein OS=Xenopus laevis GN=MGC... 62 2e-08
tr|B6UC87|B6UC87_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 2e-08
tr|B6SYX2|B6SYX2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 2e-08
tr|B6SPH4|B6SPH4_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 2e-08
tr|B6SKT2|B6SKT2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=... 62 2e-08

>tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_109840 PE=4 SV=1
Length = 63

Score = 80.5 bits (197), Expect = 4e-14
Identities = 39/56 (69%), Positives = 39/56 (69%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 203
MAKSKNHTAHNQSY Y SRKGMDPKFLRNQRYAKKHNR G AD
Sbjct: 1 MAKSKNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAAD 56


>tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 65

Score = 80.1 bits (196), Expect = 5e-14
Identities = 38/61 (62%), Positives = 43/61 (70%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
MAKSKNHTAHNQSY +TSRKGMDPKFLRNQRYA+KHN+ GA +G+
Sbjct: 1 MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYARKHNQANGAGSGTG 60

Query: 216 S 218
S
Sbjct: 61 S 61


>tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_205600 PE=4 SV=1
Length = 63

Score = 78.2 bits (191), Expect = 2e-13
Identities = 38/55 (69%), Positives = 38/55 (69%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGA 200
MAKSKNHTAHNQSY Y SRKGMDPKFLRNQRYAKKHNR G A
Sbjct: 1 MAKSKNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAA 55


>tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_106454 PE=4 SV=1
Length = 63

Score = 77.8 bits (190), Expect = 3e-13
Identities = 37/56 (66%), Positives = 39/56 (69%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 203
MAKSKNHTAHNQSY Y SRKGMDPKFLRNQRYAKKHN+ G A+
Sbjct: 1 MAKSKNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHNQTGAAE 56


>tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromosome
chr5 scaffold_64, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00033117001 PE=4 SV=1
Length = 61

Score = 71.2 bits (173), Expect = 2e-11
Identities = 34/57 (59%), Positives = 37/57 (64%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 206
MAKSKNHTAHNQSY + S KGMDPKFLRNQRYA+KHN+ G A
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPRKHRHASTKGMDPKFLRNQRYARKHNKKSGESA 57


>tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 61

Score = 70.5 bits (171), Expect = 4e-11
Identities = 37/65 (56%), Positives = 41/65 (63%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
MAKSKNHTAHNQS+ +TS KGMDPKFLRNQRYA+KHN+ G D
Sbjct: 1 MAKSKNHTAHNQSHKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKCG-----D 55

Query: 216 SCAEE 230
S EE
Sbjct: 56 SATEE 60


>tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromosome
chr7 scaffold_42, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00028098001 PE=4 SV=1
Length = 62

Score = 70.5 bits (171), Expect = 4e-11
Identities = 33/51 (64%), Positives = 36/51 (70%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNR 188
MAKSKNHTAHNQSY +TS KGMDPKFLRNQRYA+KHN+
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNK 51


>tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subsp.
japonica GN=P0475H04.12 PE=4 SV=1
Length = 60

Score = 69.7 bits (169), Expect = 7e-11
Identities = 33/54 (61%), Positives = 36/54 (66%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 197
MAKSKNHTAHNQSY TS KGMDPKFLRNQRY++KHN+ G
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_01562 PE=4 SV=1
Length = 60

Score = 69.7 bits (169), Expect = 7e-11
Identities = 33/54 (61%), Positives = 36/54 (66%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 197
MAKSKNHTAHNQSY TS KGMDPKFLRNQRY++KHN+ G
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng
GN=RPL29 PE=4 SV=1
Length = 61

Score = 68.6 bits (166), Expect = 2e-10
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +3

Query: 36 MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 206
MAKSKNHTAHNQS+ +TS +GMDPKFLRNQRYA+KHN G A
Sbjct: 1 MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESA 57