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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947702
Clone id YMU02A01NGRL0016_L21
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTTTGCAAGGTGGTTTCGAACTCCACAGAGTAGCTATGGCCAAGTCGAAGAACCACACCG
CCCACAATCAGTCTTACAAAGCGCACAAGAATGGAATCAAGAAGGCCAAGAAGCACAAGT
ACACTTCAAGGAAGGGGATGGACCCTAAGTTTCTACGGAATCAGAGATACGCAAAGAAAC
ACAATCGAGTTGGTGGTGCTGATGCAGGATCCGACTCCTGTGCTGAAGAGTAAATTGGAG
TAGTTACCCGGCATATATGTGGCTCTTGTAATGAGCAGAGAGATGGCTGCCAAGCCTCTC
TACCTCCCAATGTCGCTCTGACTGGGGACCTTTTTGATAATTCTTAATTTGCATCGTGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q84WM0
Definition sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis thaliana
Align length 58
Score (bit) 67.4
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L21, 5'
         (359 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis...    67   2e-11
sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis...    67   4e-11
sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicu...    62   7e-10
sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RP...    62   7e-10
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus G...    62   7e-10
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicu...    62   7e-10
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens G...    62   7e-10
sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=...    62   7e-10
sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces ...    47   2e-05
sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila mel...    47   2e-05
sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 OS=Schizosaccharo...    41   0.002
sp|Q54TW3|RL29_DICDI 60S ribosomal protein L29 OS=Dictyostelium ...    38   0.014
sp|Q5VUA4|ZN318_HUMAN Zinc finger protein 318 OS=Homo sapiens GN...    30   4.9  
sp|P33191|TUB8_SOLTU Induced stolen tip protein TUB8 (Fragment) ...    30   4.9  
sp|Q7SZC5|NDC1_DANRE Nucleoporin NDC1 OS=Danio rerio GN=tmem48 P...    30   4.9  
sp|Q6NHF7|PPNK_CORDI Probable inorganic polyphosphate/ATP-NAD ki...    29   6.5  
sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus mus...    29   6.5  
sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sa...    29   6.5  
sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos tau...    29   6.5  
sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN ...    29   6.5  

>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis
           thaliana GN=RPL29B PE=2 SV=2
          Length = 61

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 33/58 (56%), Positives = 37/58 (63%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAG 209
           MAKSKNHTAHNQS               +T  +GMDPKFLRNQRYA+KHN   G +AG
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAG 58


>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis
           thaliana GN=RPL29A PE=2 SV=1
          Length = 61

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 35/65 (53%), Positives = 40/65 (61%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
           MAKSKNHTAHNQS               +T  +GMDPKFLRNQRYA+KHN      AG +
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN----VKAGEN 56

Query: 216 SCAEE 230
           + AEE
Sbjct: 57  ASAEE 61


>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus
           GN=Rpl29 PE=1 SV=3
          Length = 156

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RPL29
           PE=2 SV=4
          Length = 160

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus
           GN=Rpl29 PE=2 SV=2
          Length = 160

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca
           fascicularis GN=RPL29 PE=2 SV=3
          Length = 157

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens
           GN=RPL29 PE=1 SV=2
          Length = 159

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus
           GN=RPL29 PE=2 SV=3
          Length = 152

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 194
           MAKSKNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces
           cerevisiae GN=RPL29 PE=1 SV=3
          Length = 59

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/46 (50%), Positives = 27/46 (58%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYA 173
           MAKSKNHTAHNQ+               Y S KG+DPKF RN ++A
Sbjct: 1   MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46


>sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila
           melanogaster GN=RpL29 PE=1 SV=1
          Length = 76

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/50 (50%), Positives = 28/50 (56%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHN 185
           MAKSKNHT HNQ+               + S  GMD KFL NQRYA+K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50
tr_hit_id A9S9C3
Definition tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 80.5
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947702|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_L21, 5'
         (359 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella paten...    80   4e-14
tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea...    80   5e-14
tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella paten...    78   2e-13
tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella paten...    78   3e-13
tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromos...    71   2e-11
tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Popul...    70   4e-11
tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromos...    70   4e-11
tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subs...    70   7e-11
tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng GN...    69   2e-10
tr|A9P870|A9P870_POPTR Putative uncharacterized protein OS=Popul...    69   2e-10
tr|Q9FR31|Q9FR31_SOLLC Ripening regulated protein DDTFR19 OS=Sol...    68   2e-10
tr|Q0WTD2|Q0WTD2_ARATH Putative ribosomal protein L29 OS=Arabido...    66   1e-09
tr|A8IX67|A8IX67_CHLRE Ribosomal protein L29 OS=Chlamydomonas re...    65   2e-09
tr|B6T5X5|B6T5X5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    63   6e-09
tr|Q7SZA5|Q7SZA5_XENLA MGC64312 protein OS=Xenopus laevis PE=4 SV=1    62   1e-08
tr|Q6DGL4|Q6DGL4_DANRE Zgc:92868 OS=Danio rerio GN=zgc:92868 PE=...    62   1e-08
tr|A9ZTA8|A9ZTA8_SOLSE Ribosomal protein L29 OS=Solea senegalens...    62   1e-08
tr|A9UMU7|A9UMU7_XENTR LOC100135409 protein OS=Xenopus tropicali...    62   1e-08
tr|Q5M8M8|Q5M8M8_MOUSE Putative uncharacterized protein OS=Mus m...    62   1e-08
tr|B6U0G5|B6U0G5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   1e-08
tr|Q6IPI1|Q6IPI1_HUMAN Ribosomal protein L29 OS=Homo sapiens GN=...    62   1e-08
tr|Q5T1D1|Q5T1D1_HUMAN Ribosomal protein L29 (RPL29) pseudogene ...    62   1e-08
tr|Q90YT8|Q90YT8_ICTPU Ribosomal protein L29 OS=Ictalurus puncta...    62   1e-08
tr|B6TL28|B6TL28_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   1e-08
tr|Q66KW1|Q66KW1_XENLA MGC85384 protein OS=Xenopus laevis GN=MGC...    62   2e-08
tr|B6UC87|B6UC87_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   2e-08
tr|B6SYX2|B6SYX2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   2e-08
tr|B6SPH4|B6SPH4_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   2e-08
tr|B6SKT2|B6SKT2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    62   2e-08

>tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109840 PE=4 SV=1
          Length = 63

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 39/56 (69%), Positives = 39/56 (69%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 203
           MAKSKNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHNR G AD
Sbjct: 1   MAKSKNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAAD 56


>tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 65

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 38/61 (62%), Positives = 43/61 (70%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
           MAKSKNHTAHNQSY              +TSRKGMDPKFLRNQRYA+KHN+  GA +G+ 
Sbjct: 1   MAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYARKHNQANGAGSGTG 60

Query: 216 S 218
           S
Sbjct: 61  S 61


>tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_205600 PE=4 SV=1
          Length = 63

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 38/55 (69%), Positives = 38/55 (69%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGA 200
           MAKSKNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHNR G A
Sbjct: 1   MAKSKNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAA 55


>tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106454 PE=4 SV=1
          Length = 63

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 37/56 (66%), Positives = 39/56 (69%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 203
           MAKSKNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHN+ G A+
Sbjct: 1   MAKSKNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHNQTGAAE 56


>tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromosome
           chr5 scaffold_64, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00033117001 PE=4 SV=1
          Length = 61

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 206
           MAKSKNHTAHNQSY              + S KGMDPKFLRNQRYA+KHN+  G  A
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPRKHRHASTKGMDPKFLRNQRYARKHNKKSGESA 57


>tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 61

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 37/65 (56%), Positives = 41/65 (63%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSD 215
           MAKSKNHTAHNQS+              +TS KGMDPKFLRNQRYA+KHN+  G     D
Sbjct: 1   MAKSKNHTAHNQSHKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKCG-----D 55

Query: 216 SCAEE 230
           S  EE
Sbjct: 56  SATEE 60


>tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromosome
           chr7 scaffold_42, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00028098001 PE=4 SV=1
          Length = 62

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 33/51 (64%), Positives = 36/51 (70%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNR 188
           MAKSKNHTAHNQSY              +TS KGMDPKFLRNQRYA+KHN+
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNK 51


>tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subsp.
           japonica GN=P0475H04.12 PE=4 SV=1
          Length = 60

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/54 (61%), Positives = 36/54 (66%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 197
           MAKSKNHTAHNQSY               TS KGMDPKFLRNQRY++KHN+  G
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01562 PE=4 SV=1
          Length = 60

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/54 (61%), Positives = 36/54 (66%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 197
           MAKSKNHTAHNQSY               TS KGMDPKFLRNQRY++KHN+  G
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng
           GN=RPL29 PE=4 SV=1
          Length = 61

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/57 (57%), Positives = 37/57 (64%)
 Frame = +3

Query: 36  MAKSKNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 206
           MAKSKNHTAHNQS+              +TS +GMDPKFLRNQRYA+KHN   G  A
Sbjct: 1   MAKSKNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESA 57