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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947745
Clone id YMU02A01NGRL0016_N23
Library
Length 231
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_N23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGAGAGTGATGAGGGCTTCGTTTTACTAGGCAAAGCAGTTGAGTGCTGCACCCCAAATG
GTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCAGGGGGC
ACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGA
CCGATAGCGAAGCAGTACCGTGAGGAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8CG65
Definition sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus
Align length 44
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947745|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_N23, 5'
         (205 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     29   6.4  
sp|P82600|PERC_AEDAE Chorion peroxidase OS=Aedes aegypti GN=pxt ...    29   6.4  
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     29   8.4  

>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 194  CFAIGHSGIFSLTRWSSLIHTGFCVPPATWVGA*ASCTSGYWTI 63
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P82600|PERC_AEDAE Chorion peroxidase OS=Aedes aegypti GN=pxt
           PE=1 SV=3
          Length = 790

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 30  GKAVECCTPNGDSPVAG 80
           G+A+ECCTPN  +P+ G
Sbjct: 318 GQAIECCTPNCTAPLFG 334


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
          Length = 5147

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 197  YCFAIGHSGIFSLTRWSSLIHTGFCVPPATWVGA*ASCTSGYW 69
            +C + G  G+  L+ WS     G C+PP+    A  +    +W
Sbjct: 4513 HCTSQGCQGLLPLSEWSEWSPCGPCLPPSALAPASRTALEEHW 4555
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947745|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_N23, 5'
         (205 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    69   1e-10
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   1e-10
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   1e-10
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   1e-10
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    57   6e-07
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            56   1e-06
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    49   3e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    49   2e-04
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    48   2e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    47   4e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    47   5e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    46   0.001
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    46   0.001
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    46   0.001
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    45   0.002
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    40   0.044
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    40   0.044
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    40   0.044
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    40   0.044
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    40   0.044
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    38   0.22 
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    38   0.22 
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    37   0.37 
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    37   0.37 
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    37   0.49 
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    37   0.49 
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    37   0.49 
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    37   0.49 
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    37   0.49 
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    37   0.49 

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = +3

Query: 39  VECCTPNGDSPVAGXXXXXXXXXXXRGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT +G+SPVA             GH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = +3

Query: 39  VECCTPNGDSPVAGXXXXXXXXXXXRGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT +G+SPVA             GH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = +3

Query: 39  VECCTPNGDSPVAGXXXXXXXXXXXRGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT +G+SPVA             GH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = +3

Query: 39  VECCTPNGDSPVAGXXXXXXXXXXXRGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT +G+SPVA             GH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/47 (57%), Positives = 31/47 (65%)
 Frame = +3

Query: 60  GDSPVAGXXXXXXXXXXXRGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           G+SPV+             GH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/36 (75%), Positives = 28/36 (77%)
 Frame = -3

Query: 203 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPPATWVGA 96
           SRY FAIGH G+FSL RWS LIHTGF VP AT V A
Sbjct: 9   SRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 49.3 bits (116), Expect(2) = 3e-06
 Identities = 23/32 (71%), Positives = 24/32 (75%)
 Frame = -3

Query: 203 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPPAT 108
           SRY FAI H  +FSL RWS LIHTGF VP AT
Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 24.6 bits (52), Expect(2) = 3e-06
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 76  ATGLSPFGVQHSTALPSKT 20
           ATG SP  VQH  A PS T
Sbjct: 279 ATGHSPSRVQHFAASPSNT 297


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPXXXXXXXXXXXLPATGLSP 59
           PHGT SLSV++EYLA +GGP  F +DF CP              TGLSP
Sbjct: 32  PHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRASH---TGLSP 77


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPXXXXXXXXXXXLPATGLSP 59
           PHGT+SLSVT+EYL L+ GP  F +DF CP              TGLSP
Sbjct: 108 PHGTSSLSVTEEYLGLEDGPPMFRQDFTCP---ALLKADTRFTPTGLSP 153


>tr|B2PX01|B2PX01_PROST Putative uncharacterized protein
           OS=Providencia stuartii ATCC 25827 GN=PROSTU_01097 PE=4
           SV=1
          Length = 92

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 26/50 (52%), Positives = 28/50 (56%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPXXXXXXXXXXXLPATGLSPF 56
           PHGT SLSV QEYLAL+ GP  F +D  CP              TGLSPF
Sbjct: 35  PHGTGSLSVNQEYLALEDGPPIFRQDNTCPALLVEFTTPTPSD-TGLSPF 83