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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947747
Clone id YMU02A01NGRL0016_O01
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_O01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGGTGGTTCTGGGCCAAGAGTGCAGTGTGCTCAACAGTAAGAGTACGACTTATGAAAGT
CCAAGTGGGATTGAAATTCCATTTAAGTAGTTCTCCCCCCTCAACTGGTGTGAGGAACAG
GTTTCTTTTAATAGCTTGTCTTGCAGCGAAGACTGCCTTGGATACATCCCATGGACATAA
CTAATGCTCATCAGTCATCTTTAGACTAGATGGTGTGCCGTTAGGTTTTGAAGATGTGCT
GGTATAGGATTTTTGGGCGTGTATTGTAATTTGGGTACCATACTGTTTTATCATTTAAAA
AGAACTTCTGATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8A0Y9
Definition sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex OS=Bacteroides thetaiotaomicron
Align length 98
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947747|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O01, 5'
         (314 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex ...    30   4.9  
sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rer...    29   8.3  

>sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex
           OS=Bacteroides thetaiotaomicron GN=rex PE=3 SV=1
          Length = 220

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
 Frame = -3

Query: 291 IKQYGTQITIHAQKSYTSTSSKPNGTP-----SSLKMTDEH*LCPWDVSKAVFAARQAIK 127
           +K +G +I        T   +  NG P       LK  +E+     DV   V      I 
Sbjct: 113 LKHFGLEIVAAFDVDPTLVGTNLNGIPIYHSDDFLKKMEEY-----DVQIGVLTVPIEIA 167

Query: 126 RNLFLTPVEGGELLKWNFNPTWTFISRTLTVEHTALLA 13
           + +    V+GG    WNF P    +   + V++T+L A
Sbjct: 168 QCITDMMVDGGIKAVWNFTPFRIRVPEDIVVQNTSLYA 205


>sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rerio
           GN=rbbp7 PE=2 SV=1
          Length = 426

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 255 QKSYTSTSSKPNGTPSSLKMTDEH*LCPWDVSKAVFAARQAIKRNLFLTPVEGGELLKWN 76
           QK     S  PN + + L  +D+H +C WD+S A    +    + +F       E + W+
Sbjct: 177 QKEGYGLSWNPNLSGNLLSASDDHTICLWDISGAPKEGKIVDAKTIFTGHTAVVEDVSWH 236
tr_hit_id A9TJW0
Definition tr|A9TJW0|A9TJW0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947747|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O01, 5'
         (314 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJW0|A9TJW0_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.64 
tr|B8E149|B8E149_9BACT 4-alpha-glucanotransferase OS=Dictyoglomu...    35   1.4  
tr|A0JT83|A0JT83_ARTS2 Peptidase C60, sortase A and B OS=Arthrob...    33   9.3  

>tr|A9TJW0|A9TJW0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93711 PE=4 SV=1
          Length = 1022

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +2

Query: 2   RWFWAKSAVCSTVRVRLMKVQVGLKFHLSSSPPSTGVRNRFLLIACLAAKTALDTSHGHN 181
           +WF A +A C T ++ L  +Q+ L   L  S      RN  ++I+  A KT L +S    
Sbjct: 296 KWFSAGNANCPTTKIELENLQIKLNLALKQSIQEWKERN--IVISIAATKTKLQSSDESE 353

Query: 182 *CSSV 196
            CSS+
Sbjct: 354 ICSSL 358


>tr|B8E149|B8E149_9BACT 4-alpha-glucanotransferase OS=Dictyoglomus
           turgidum DSM 6724 GN=Dtur_0896 PE=4 SV=1
          Length = 686

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 123 NLFLTPVEGGELLKWNFNPTWTFISRTLT 37
           NL+L+P+ GG LL+W+F P    ++ TLT
Sbjct: 421 NLYLSPMHGGSLLEWDFRPKAFNLTNTLT 449


>tr|A0JT83|A0JT83_ARTS2 Peptidase C60, sortase A and B
           OS=Arthrobacter sp. (strain FB24) GN=Arth_0855 PE=4 SV=1
          Length = 299

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 20  SAVCSTVRVRLMKVQVGLKFHLSSSPPSTGVRNRFLLIAC 139
           S    T+R R+  V   +K  L  SP  TGV NR +LI+C
Sbjct: 240 STATGTMRYRVESVDTYVKSSLKDSPIWTGVPNRLVLISC 279