NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947756
Clone id YMU02A01NGRL0016_O10
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_O10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTCGACGATTGCAAAGCTGTTTGGCCCTCGGCTACTGAAGTTTTTTGCAGGGAGGAAGC
CACCTAGCATTCTGGGAGCTTTGAAGGATCAGAGCCCTATGCCGCTGTCGTCTTTGGCAC
GGGAGGCGACGGCGTCACTCATCAATTCGTATGCGCACAAGGACTTTCCGCTCTCCACAT
CCCAAGTGGTCTCGCAGTTCAACGATGCTCTGGAGACTTCTCAGACCGCAGCCCAGCAGG
CCCTCAAGTTTCAGCAGCTCAACGAGGGCGTGTAAGCGCATGCACCCATCGGACCCTAGC
TGTCTCTTTCTATCCGCCCTTCGTCACTGTAAAGCCTAGTTCGCTACCCCCTCCTCCCTT
CATGCTACCCATCCTCCCCTATCTTCATATTGTTTTTCTTCAAGGTGATACGACCAACCC
TTCAGAGCCTTTGTTGCAATCACTGCCCCCCTTGTTTTGTCATTAACCTCTTCTTTTGAA
TGTAATGAGATTGTGAAACGTAATGAGAATATCTTTAGCGCGCTTCAGAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q2SB47
Definition sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Hahella chejuensis (strain KCTC 2396)
Align length 54
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947756|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O10, 5'
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Ha...    33   1.1  
sp|O00151|PDLI1_HUMAN PDZ and LIM domain protein 1 OS=Homo sapie...    31   3.2  
sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic sub...    31   4.1  
sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic sub...    30   7.2  
sp|Q9I0Q1|UVRC_PSEAE UvrABC system protein C OS=Pseudomonas aeru...    30   9.2  
sp|Q02N77|UVRC_PSEAB UvrABC system protein C OS=Pseudomonas aeru...    30   9.2  
sp|Q47Z50|SYP_COLP3 Prolyl-tRNA synthetase OS=Colwellia psychrer...    30   9.2  

>sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV
           OS=Hahella chejuensis (strain KCTC 2396) GN=hmuV PE=3
           SV=1
          Length = 256

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 33  LLKFFAGRKPPSILGALKDQSPMPLSSLAR-EATASLINSYAHKDFPLSTSQVV 191
           LLK  AG  PPS    L D  P+   SL++     ++++   H DFP S  +VV
Sbjct: 43  LLKTLAGDLPPSHGHVLLDDEPISQFSLSQLSRRRAVLSQSVHLDFPFSAMEVV 96


>sp|O00151|PDLI1_HUMAN PDZ and LIM domain protein 1 OS=Homo sapiens
           GN=PDLIM1 PE=1 SV=4
          Length = 329

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +3

Query: 72  LGALKDQSPMPLS-SLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAA 233
           +G+  ++S MP + S A   TA +I +  +    L +S+ +S FN+ALE S+TAA
Sbjct: 116 IGSAHNRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALE-SKTAA 169


>sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic subunit
            OS=Xenopus laevis GN=prkdc PE=2 SV=1
          Length = 4146

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = +3

Query: 30   RLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQVVSQFNDA 209
            R  K+FA RK      + +   P  LSS +  A +SLI   +  DF    S  V  F+ +
Sbjct: 2019 RKKKYFAIRKEARDASSTESDEPSYLSSQSYMADSSLIEEMSQFDF----STGVQSFSYS 2074

Query: 210  LETSQTAAQQALKFQQLNEG 269
             ++   +   + K +Q+ EG
Sbjct: 2075 SQSKMLSQSASRKKEQITEG 2094


>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic
           subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1
          Length = 4134

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 271 CKRMHPSDPSCLFLSALRHCKA*FATPSSLHATH 372
           CK MHP+D   +++  L+ CK  + T +     H
Sbjct: 366 CKAMHPADVDAMYIELLQRCKQMYLTEAETIDDH 399


>sp|Q9I0Q1|UVRC_PSEAE UvrABC system protein C OS=Pseudomonas
           aeruginosa GN=uvrC PE=3 SV=1
          Length = 608

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 105 LSSLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQALKFQQL 260
           LS   R+  A LI +  H+DFP+  S +       LE S        ++QQL
Sbjct: 305 LSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQL 356


>sp|Q02N77|UVRC_PSEAB UvrABC system protein C OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=uvrC PE=3 SV=1
          Length = 608

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 105 LSSLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQALKFQQL 260
           LS   R+  A LI +  H+DFP+  S +       LE S        ++QQL
Sbjct: 305 LSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQL 356


>sp|Q47Z50|SYP_COLP3 Prolyl-tRNA synthetase OS=Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681) GN=proS PE=3
           SV=1
          Length = 569

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 21  FGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQVVSQF 200
           +GP LL+     K P +LG   ++       +  +  A+ ++SY  K  PL+  Q+ S+F
Sbjct: 89  YGPELLRINDRHKRPFVLGPTHEE-------VVTKLVANELSSY--KQLPLNVFQIQSKF 139

Query: 201 NDAL 212
            D +
Sbjct: 140 RDEI 143
tr_hit_id Q9S728
Definition tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840) (Protodermal factor 1) OS=Arabidopsis thaliana
Align length 68
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947756|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O10, 5'
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840...    49   2e-04
tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome...    48   3e-04
tr|Q7F997|Q7F997_ORYSA OSJNBa0073E02.5 protein OS=Oryza sativa G...    47   5e-04
tr|Q0JJP4|Q0JJP4_ORYSJ Os01g0726700 protein OS=Oryza sativa subs...    47   5e-04
tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subs...    47   5e-04
tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa G...    47   5e-04
tr|B8A8Z5|B8A8Z5_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|B5G4Z8|B5G4Z8_GOSBA PDF OS=Gossypium barbadense PE=2 SV=1           47   5e-04
tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|A2ZXF5|A2ZXF5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|A2XVJ3|A2XVJ3_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|B6U5L9|B6U5L9_MAIZE DNA-directed RNA polymerase II largest su...    45   0.003
tr|B6T6E4|B6T6E4_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|B4FHD3|B4FHD3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|A9PG40|A9PG40_POPTR Putative uncharacterized protein OS=Popul...    42   0.019
tr|B6T5X0|B6T5X0_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1                 41   0.042
tr|A2X2P5|A2X2P5_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.12 
tr|A9RBG6|A9RBG6_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.16 
tr|Q6H525|Q6H525_ORYSJ Putative protodermal factor (Putative unc...    38   0.27 
tr|Q56UU6|Q56UU6_ORYSJ Proline-and threonine-rich protein OS=Ory...    38   0.27 
tr|Q0E2K8|Q0E2K8_ORYSJ Os02g0230300 protein (Fragment) OS=Oryza ...    38   0.27 
tr|A9SPT3|A9SPT3_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.27 
tr|B6TNA8|B6TNA8_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1                 37   0.61 
tr|A7P875|A7P875_VITVI Chromosome chr3 scaffold_8, whole genome ...    36   1.0  
tr|A5BQN4|A5BQN4_VITVI Putative uncharacterized protein OS=Vitis...    36   1.0  
tr|Q5QN39|Q5QN39_ORYSJ cDNA clone:J033042J01, full insert sequen...    35   1.8  
tr|Q0JPU0|Q0JPU0_ORYSJ Os01g0201600 protein (Fragment) OS=Oryza ...    35   1.8  
tr|Q8S8D0|Q8S8D0_ARATH Expressed protein (At2g20515) (Putative u...    35   2.3  
tr|Q8LCX1|Q8LCX1_ARATH Putative uncharacterized protein OS=Arabi...    35   2.3  
tr|Q6P800|Q6P800_XENTR PDZ and LIM domain 1 (Elfin) OS=Xenopus t...    33   6.7  

>tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840)
           (Protodermal factor 1) OS=Arabidopsis thaliana GN=PDF1
           PE=2 SV=1
          Length = 306

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 39/68 (57%)
 Frame = +3

Query: 66  SILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQAL 245
           ++L AL +    P+ +L RE TAS +NS  +  FP +T QV   F   L +++ A +QA 
Sbjct: 233 NLLQALSNTRSDPIGALYREGTASWLNSMVNHKFPFTTPQVRDHFVAGLSSNKAATKQAH 292

Query: 246 KFQQLNEG 269
            F+  NEG
Sbjct: 293 TFKLANEG 300


>tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028591001
           PE=4 SV=1
          Length = 153

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   STIAKLFGPRLLKFFAGRKPPSILGALKDQSPMP--LSSLAREATASLINSYAHKDFPLS 176
           ST+AK+FG R  + F  R   ++L A      +      L ++ +A+LINSYA K FP S
Sbjct: 63  STVAKVFGSRASERF--RSDMTLLEATAQDESVENVFHGLLKQTSAALINSYARKGFPYS 120

Query: 177 TSQVVSQFNDALETSQTAAQQALKFQQLNE 266
             +V +    AL + + AA QA  F   NE
Sbjct: 121 AWEVKTLLIQALVSEEAAALQAEHFSIANE 150


>tr|Q7F997|Q7F997_ORYSA OSJNBa0073E02.5 protein OS=Oryza sativa
           GN=OSJNBa0073E02.5 PE=4 SV=1
          Length = 175

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   STIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREATASLINSYAHKDFPLS 176
           + ++K+FG R +  +  R          D   S    + L ++ +A+L+N+YA K FPL 
Sbjct: 83  AAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQGSAALLNAYARKGFPLD 142

Query: 177 TSQVVSQFNDALETSQTAAQQALKFQQLNE 266
           + +V +   +AL +   AA QA +F+Q NE
Sbjct: 143 SWEVKALLLEALVSEDAAAAQADRFEQANE 172


>tr|Q0JJP4|Q0JJP4_ORYSJ Os01g0726700 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0726700 PE=4 SV=1
          Length = 662

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   IAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQV 188
           +A+LFGP     F      ++  AL +     +  L RE TASL+NS  +  FP +T QV
Sbjct: 572 MARLFGPTAAAPFG--HDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQV 629

Query: 189 VSQFNDALET--SQTAAQQALKFQQLNEG 269
              F+ AL +     AA QA  F++ NEG
Sbjct: 630 KDAFSAALSSGGDHAAAAQAQLFKKANEG 658


>tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0517000 PE=4 SV=1
          Length = 156

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   STIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREATASLINSYAHKDFPLS 176
           + ++K+FG R +  +  R          D   S    + L ++ +A+L+N+YA K FPL 
Sbjct: 64  AAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQGSAALLNAYARKGFPLD 123

Query: 177 TSQVVSQFNDALETSQTAAQQALKFQQLNE 266
           + +V +   +AL +   AA QA +F+Q NE
Sbjct: 124 SWEVKALLLEALVSEDAAAAQADRFEQANE 153


>tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa
           GN=OSIGBa0145M07.3 PE=4 SV=1
          Length = 179

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   STIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREATASLINSYAHKDFPLS 176
           + ++K+FG R +  +  R          D   S    + L ++ +A+L+N+YA K FPL 
Sbjct: 87  AAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQGSAALLNAYARKGFPLD 146

Query: 177 TSQVVSQFNDALETSQTAAQQALKFQQLNE 266
           + +V +   +AL +   AA QA +F+Q NE
Sbjct: 147 SWEVKALLLEALVSEDAAAAQADRFEQANE 176


>tr|B8A8Z5|B8A8Z5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03588 PE=4 SV=1
          Length = 625

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   IAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQV 188
           +A+LFGP     F      ++  AL +     +  L RE TASL+NS  +  FP +T QV
Sbjct: 535 MARLFGPTAAAPFG--HDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQV 592

Query: 189 VSQFNDALET--SQTAAQQALKFQQLNEG 269
              F+ AL +     AA QA  F++ NEG
Sbjct: 593 KDAFSAALSSGGDHAAAAQAQLFKKANEG 621


>tr|B5G4Z8|B5G4Z8_GOSBA PDF OS=Gossypium barbadense PE=2 SV=1
          Length = 294

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 29/68 (42%), Positives = 37/68 (54%)
 Frame = +3

Query: 66  SILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQAL 245
           S+  AL +     L +L RE TAS +NS  +  FP ST QV   F  AL ++  AA QA 
Sbjct: 221 SLPQALSNTRTDGLGALYREGTASFLNSMVNNRFPFSTKQVRETFVAALGSNSAAAAQAR 280

Query: 246 KFQQLNEG 269
            F+  NEG
Sbjct: 281 LFKLANEG 288


>tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014830 PE=4 SV=1
          Length = 179

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   STIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREATASLINSYAHKDFPLS 176
           + ++K+FG R +  +  R          D   S    + L ++ +A+L+N+YA K FPL 
Sbjct: 87  AAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQGSAALLNAYARKGFPLD 146

Query: 177 TSQVVSQFNDALETSQTAAQQALKFQQLNE 266
           + +V +   +AL +   AA QA +F+Q NE
Sbjct: 147 SWEVKALLLEALVSEDAAAAQADRFEQANE 176


>tr|A2ZXF5|A2ZXF5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003227 PE=4 SV=1
          Length = 668

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   IAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQV 188
           +A+LFGP     F      ++  AL +     +  L RE TASL+NS  +  FP +T QV
Sbjct: 578 MARLFGPTAAAPFG--HDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQV 635

Query: 189 VSQFNDALET--SQTAAQQALKFQQLNEG 269
              F+ AL +     AA QA  F++ NEG
Sbjct: 636 KDAFSAALSSGGDHAAAAQAQLFKKANEG 664