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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947765
Clone id YMU02A01NGRL0016_O23
Library
Length 223
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_O23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTTGCCGCCCATCTTTCTGACCCTGGCCACAACACCATTTTCTCGGCTTTCTTGAGCAA
GTGAGCGATGATCCTTCTACCTCCATCACTTGGAGCAGATATTGACTTTCGCTTCCTTTG
TATGCCAATTGAGAAGTTTGTAAAAACCTTTTATTTGGTTGGAAGGTCCTATTTTGTCGT
GTTAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P10708
Definition sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum
Align length 20
Score (bit) 32.3
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947765|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O23, 5'
         (183 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...    32   0.74 
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...    32   0.74 

>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 251 LFAHLADPGHATIFAAFSPK 270


>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
           OS=Petunia hybrida PE=2 SV=1
          Length = 270

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 251 LFAHLADPGHATIFAAFSPK 270
tr_hit_id Q02070
Definition tr|Q02070|Q02070_PINSY Type II chlorophyll a /b-binding protein OS=Pinus sylvestris
Align length 20
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947765|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_O23, 5'
         (183 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q02070|Q02070_PINSY Type II chlorophyll a /b-binding protein ...    35   2.5  
tr|Q8VXA6|Q8VXA6_PICAB Putative chlorophyll A-B binding protein ...    34   3.2  
tr|A9NQF7|A9NQF7_PICSI Putative uncharacterized protein OS=Picea...    34   3.2  
tr|A9NKX1|A9NKX1_PICSI Putative uncharacterized protein OS=Picea...    34   3.2  
tr|A9PGU3|A9PGU3_POPTR Putative uncharacterized protein OS=Popul...    33   5.5  
tr|Q9SYW8|Q9SYW8_ARATH Lhca2 protein OS=Arabidopsis thaliana GN=...    33   9.4  
tr|Q9M320|Q9M320_ARATH Lhca2 protein OS=Arabidopsis thaliana GN=...    33   9.4  
tr|Q42111|Q42111_ARATH CAB7: CAB binding protein (Fragment) OS=A...    33   9.4  
tr|Q41038|Q41038_PEA Type II chlorophyll a/b binding protein fro...    33   9.4  
tr|Q3E8X4|Q3E8X4_ARATH Uncharacterized protein At5g28450.1 OS=Ar...    33   9.4  
tr|B6SMV5|B6SMV5_MAIZE Chlorophyll a-b binding protein OS=Zea ma...    33   9.4  
tr|B6SJV3|B6SJV3_MAIZE Chlorophyll a-b binding protein OS=Zea ma...    33   9.4  
tr|A7QP61|A7QP61_VITVI Chromosome chr1 scaffold_136, whole genom...    33   9.4  
tr|A5B4F0|A5B4F0_VITVI Putative uncharacterized protein OS=Vitis...    33   9.4  

>tr|Q02070|Q02070_PINSY Type II chlorophyll a /b-binding protein
           OS=Pinus sylvestris GN=lhaB1 PE=2 SV=1
          Length = 278

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF SK
Sbjct: 259 LLAHLADPGHATIFAAFSSK 278


>tr|Q8VXA6|Q8VXA6_PICAB Putative chlorophyll A-B binding protein of
           LHCI type II OS=Picea abies GN=pPA0001 PE=2 SV=1
          Length = 278

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH T+F+AF SK
Sbjct: 259 LLAHLADPGHATVFAAFSSK 278


>tr|A9NQF7|A9NQF7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 233

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH T+F+AF SK
Sbjct: 214 LLAHLADPGHATVFAAFSSK 233


>tr|A9NKX1|A9NKX1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 278

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH T+F+AF SK
Sbjct: 259 LLAHLADPGHATVFAAFSSK 278


>tr|A9PGU3|A9PGU3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 269

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH T+FSAF  K
Sbjct: 250 LFAHLADPGHATVFSAFTPK 269


>tr|Q9SYW8|Q9SYW8_ARATH Lhca2 protein OS=Arabidopsis thaliana
           GN=Lhca2 PE=2 SV=1
          Length = 257

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 238 LFAHLADPGHATIFAAFTPK 257


>tr|Q9M320|Q9M320_ARATH Lhca2 protein OS=Arabidopsis thaliana
           GN=At3g61470 PE=4 SV=1
          Length = 257

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 238 LFAHLADPGHATIFAAFTPK 257


>tr|Q42111|Q42111_ARATH CAB7: CAB binding protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=2
          Length = 61

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 42  LFAHLADPGHATIFAAFTPK 61


>tr|Q41038|Q41038_PEA Type II chlorophyll a/b binding protein from
           photosystem I OS=Pisum sativum GN=lhaB PE=1 SV=1
          Length = 269

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 250 LFAHLADPGHATIFAAFTPK 269


>tr|Q3E8X4|Q3E8X4_ARATH Uncharacterized protein At5g28450.1
           OS=Arabidopsis thaliana GN=At5g28450 PE=4 SV=1
          Length = 173

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   LAAHLSDPGHNTIFSAFLSK 61
           L AHL+DPGH TIF+AF  K
Sbjct: 154 LFAHLADPGHATIFAAFTPK 173