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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947768
Clone id YMU02A01NGRL0016_P02
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_P02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAAACGGGAGATGCTTTGTGGTGATAGCAATGGCGCCGGTTTCATAGGAGGATTTATG
AGCACTTTTGATGATTGATTAAGGACTGAACTGCAGTGCTCTGTAATATTCAACCCTATA
AGACATTTGTTTATGCTCTACCATCATTGTCCAGCTCAAAGTATCTATGTAAATTAGGTA
TCAGGTGAGTCAGTGAGGATTTGTGTAATTTTGTCCAACCCTCCCTCTTTCTTTCACTTC
TTTTCCATTGGCTATGTATCTCCACAACAGCATCCCCTTTCTGACTGTGATGGACTTTTT
TATGAAGGCTTGAAAGCTATATAGCGTGGGTTATTTTTGATAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P50365
Definition sp|P50365|NU5M_ALLMA NADH-ubiquinone oxidoreductase chain 5 OS=Allomyces macrogynus
Align length 28
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947768|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P02, 5'
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50365|NU5M_ALLMA NADH-ubiquinone oxidoreductase chain 5 OS=A...    30   3.7  

>sp|P50365|NU5M_ALLMA NADH-ubiquinone oxidoreductase chain 5
           OS=Allomyces macrogynus GN=ND5 PE=3 SV=1
          Length = 641

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 190 SVRICVILSNPPSFFHFFSIGYVSPQQH 273
           S+ +CV++S+  S  H +SIGY+    H
Sbjct: 84  SITMCVVVSSISSLVHLYSIGYMQGDPH 111
tr_hit_id A7PF39
Definition tr|A7PF39|A7PF39_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 25
Score (bit) 51.2
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947768|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P02, 5'
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PF39|A7PF39_VITVI Chromosome chr11 scaffold_13, whole genom...    51   3e-05
tr|A5AJ89|A5AJ89_VITVI Putative uncharacterized protein (Chromos...    51   3e-05
tr|Q9SN73|Q9SN73_ARATH Putative uncharacterized protein F1P2.200...    50   6e-05
tr|A9PH85|A9PH85_POPTR Putative uncharacterized protein OS=Popul...    50   7e-05
tr|Q9ATG0|Q9ATG0_CASSA Putative chaperon P13.9 OS=Castanea sativ...    49   1e-04
tr|Q9XF14|Q9XF14_MAIZE Bundle sheath defective protein 2 OS=Zea ...    49   2e-04
tr|B6SUD2|B6SUD2_MAIZE Bundle sheath defective protein 2 OS=Zea ...    49   2e-04
tr|A7P5S3|A7P5S3_VITVI Chromosome chr4 scaffold_6, whole genome ...    48   3e-04
tr|A9RWM8|A9RWM8_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   5e-04
tr|Q1HDX7|Q1HDX7_MUSAC Bundle sheath defective protein 2 (Fragme...    46   8e-04
tr|Q69WH2|Q69WH2_ORYSJ Os06g0332800 protein OS=Oryza sativa subs...    45   0.001
tr|A2YCH0|A2YCH0_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|B8LL53|B8LL53_PICSI Putative uncharacterized protein OS=Picea...    41   0.034
tr|A9NLC6|A9NLC6_PICSI Putative uncharacterized protein OS=Picea...    41   0.034

>tr|A7PF39|A7PF39_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016896001
           PE=4 SV=1
          Length = 65

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           G+RE+LCGD NGAGFIGGFMSTFD+
Sbjct: 41  GRREILCGDCNGAGFIGGFMSTFDE 65


>tr|A5AJ89|A5AJ89_VITVI Putative uncharacterized protein (Chromosome
           chr11 scaffold_13, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00016892001 PE=4 SV=1
          Length = 132

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           G+RE+LCGD NGAGFIGGFMSTFD+
Sbjct: 108 GRREILCGDCNGAGFIGGFMSTFDE 132


>tr|Q9SN73|Q9SN73_ARATH Putative uncharacterized protein F1P2.200
           (Putative uncharacterized protein At3g47650)
           OS=Arabidopsis thaliana GN=F1P2.200 PE=2 SV=1
          Length = 136

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GK+E+LCGD NGAGFIGGF+STFD+
Sbjct: 112 GKKEVLCGDCNGAGFIGGFLSTFDE 136


>tr|A9PH85|A9PH85_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 132

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           G++EMLCG+ NGAGFIGGFMSTFD+
Sbjct: 108 GRKEMLCGNCNGAGFIGGFMSTFDE 132


>tr|Q9ATG0|Q9ATG0_CASSA Putative chaperon P13.9 OS=Castanea sativa
           PE=2 SV=1
          Length = 131

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GKRE+LCG  NGAGF+GGFMSTFD+
Sbjct: 107 GKREILCGSCNGAGFLGGFMSTFDE 131


>tr|Q9XF14|Q9XF14_MAIZE Bundle sheath defective protein 2 OS=Zea
           mays GN=bsd2 PE=2 SV=1
          Length = 129

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GKRE+LCG+ NGAGF+GGF+STFD+
Sbjct: 102 GKREILCGNCNGAGFLGGFLSTFDE 126


>tr|B6SUD2|B6SUD2_MAIZE Bundle sheath defective protein 2 OS=Zea
           mays PE=2 SV=1
          Length = 129

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GKRE+LCG+ NGAGF+GGF+STFD+
Sbjct: 102 GKREILCGNCNGAGFLGGFLSTFDE 126


>tr|A7P5S3|A7P5S3_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032639001
           PE=4 SV=1
          Length = 128

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 18/25 (72%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GK+++LCG+ NGAGF+GGFMSTFD+
Sbjct: 104 GKKDILCGNCNGAGFVGGFMSTFDE 128


>tr|A9RWM8|A9RWM8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_38559 PE=4 SV=1
          Length = 72

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 1   GKREMLCGDSNGAGFIGGFMSTFDD 75
           GKR+MLCGD NGAGF+GGFM+T D+
Sbjct: 48  GKRQMLCGDCNGAGFMGGFMNTQDE 72


>tr|Q1HDX7|Q1HDX7_MUSAC Bundle sheath defective protein 2
          (Fragment) OS=Musa acuminata PE=2 SV=1
          Length = 27

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = +1

Query: 4  KREMLCGDSNGAGFIGGFMSTFDD 75
          K+E+LCG+ NGAGF+GGFMSTFD+
Sbjct: 1  KKEILCGNCNGAGFLGGFMSTFDE 24