NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947771
Clone id YMU02A01NGRL0016_P05
Library
Length 294
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_P05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAATTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGCGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P33434
Definition sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
Align length 35
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P05, 5'
         (265 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    30   3.8  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    30   3.8  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    30   3.8  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    30   5.0  
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c...    29   8.5  

>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 WRNNKKTHIFCEDKVFSFN*FSRDTIPQLSKSLRD 40
           W  NKKT+IF  DK + +N   +   P   K + D
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 610


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 WRNNKKTHIFCEDKVFSFN*FSRDTIPQLSKSLRD 40
           W  NKKT+IF  DK + +N   +   P   K + D
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 608


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 WRNNKKTHIFCEDKVFSFN*FSRDTIPQLSKSLRD 40
           W  NKKT+IF  DK + +N   +   P   K + D
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD 609


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 WRNNKKTHIFCEDKVFSFN*FSRDTIPQLSKSLRD 40
           W  NKKT+IF  DK + +N   +   P   K + D
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIAD 610


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
           cuniculus GN=MMP2 PE=2 SV=1
          Length = 662

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 WRNNKKTHIFCEDKVFSFN*FSRDTIPQLSKSLRD 40
           W  NKKT+IF  DK + +N   +   P   + + D
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIAD 610
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P05, 5'
         (265 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   2.4  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/50 (30%), Positives = 31/50 (62%)
 Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSINLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L +NL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283