NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947772
Clone id YMU02A01NGRL0016_P06
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_P06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCTTACAAGATGTCAACATGGACGAGGAAATGAGGAGGAAGCAGCAGCAACAGAGCCA
TGAAGCTTATGAGGAAGACGAGGAAGGTGGTTCTGGGCCAAGAGTGCAGTGTGCTCAACA
GTAAGAGTACGACTTATGAAAGTCCAAGTGGGATTGAAATTCCATTTAAGTAGTTCTCCC
CCCTCAACTGGTGTGAGGAACAGGTTTCTTTTAATAGCTTGTCTTGCAGCGAAGACTGCC
TTGGATACATCCCATGGACATAACTAATGCTCATCAGTCATCTTTAGACTAGATGGTGTG
CCGTTAGGTTTTGAAGATGTGCTGGTATAGGATTTTTGGGCGTGTATTGTAATTTGGGTA
CCATACTGTTTTATCATTTAAAAAGAACTTCTGATTGTTNAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q03363
Definition sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum
Align length 40
Score (bit) 58.5
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947772|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P06, 5'
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Alliu...    59   1e-08
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN...    58   1e-08
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummu...    54   2e-07
sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=...    48   2e-05
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis th...    46   7e-05
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis th...    45   1e-04
sp|Q873X0|PACC_GIBMO pH-response transcription factor pacC/RIM10...    34   0.26 
sp|Q8BQ48|K1731_MOUSE Leucine-rich repeat-containing protein KIA...    32   0.75 
sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription...    30   3.7  
sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex ...    30   3.7  
sp|P02858|GLYG4_SOYBN Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1      30   4.9  
sp|Q9HRY3|DNAJ_HALSA Chaperone protein dnaJ OS=Halobacterium sal...    30   4.9  
sp|Q9Y6F6|MRVI1_HUMAN Protein MRVI1 OS=Homo sapiens GN=MRVI1 PE=...    29   6.3  
sp|Q8VDQ9|KRI1_MOUSE Protein KRI1 homolog OS=Mus musculus GN=Kri...    29   6.3  
sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Scleroti...    29   6.4  
sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rer...    29   8.3  

>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium
           porrum GN=DNAJ1 PE=2 SV=1
          Length = 397

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 27/40 (67%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 121
           + DVN++EEMRRKQ Q + EAY+ED+EG G G RVQCAQQ
Sbjct: 358 MHDVNIEEEMRRKQHQHAQEAYDEDDEGHGGGQRVQCAQQ 397


>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum
           GN=LDJ2 PE=2 SV=1
          Length = 418

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/40 (67%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 121
           + DVN++EEMRRKQ QQ+ EAY+ED+EG G   RVQCAQQ
Sbjct: 379 MHDVNIEEEMRRKQHQQAQEAYDEDDEGHGGAQRVQCAQQ 418


>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex
           nummularia PE=2 SV=1
          Length = 417

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 121
           L +VN++EEM+RKQ Q   EAY+ED+E   G RVQCAQQ
Sbjct: 379 LHNVNIEEEMKRKQTQAQQEAYDEDDEPAGGQRVQCAQQ 417


>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus
           GN=DNAJ1 PE=2 SV=1
          Length = 413

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEE-GGSGPRVQCAQQ 121
           L DVN++EEMRRKQ Q   EAY+EDE+  G   RVQCAQQ
Sbjct: 377 LHDVNIEEEMRRKQAQ---EAYDEDEDMHGGAQRVQCAQQ 413


>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis
           thaliana GN=ATJ2 PE=1 SV=2
          Length = 419

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEG--GSGPRVQCAQQ 121
           L DVN+++EM+RK Q Q  EAY++DEE   G   RVQCAQQ
Sbjct: 380 LHDVNIEDEMKRKAQAQ-REAYDDDEEDHPGGAQRVQCAQQ 419


>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis
           thaliana GN=ATJ3 PE=1 SV=2
          Length = 420

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEG----GSGPRVQCAQQ 121
           L DVN+++EMRRK Q Q  EAY++D+E     G   RVQCAQQ
Sbjct: 379 LHDVNIEDEMRRKAQAQ-REAYDDDDEDDDHPGGAQRVQCAQQ 420


>sp|Q873X0|PACC_GIBMO pH-response transcription factor pacC/RIM101
           OS=Gibberella moniliformis GN=PAC1 PE=3 SV=1
          Length = 613

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
 Frame = -3

Query: 332 SYTSTSSKPNGTPSSLKMTDEH*LCPWDVSKAVFAARQAIKRNLFLTPVEGGELLKWNFN 153
           S TS++S+ +  PS+   +D++ +C W+     F A +A+  ++    V        N  
Sbjct: 44  SATSSTSQSSTAPST--SSDDNLICRWNACNQKFPAPEALYEHICERHVGRKSTNNLNLT 101

Query: 152 PTWTFISRTLTV--EHTALLAQNHLPRLPHKLHGSVAAASSSFPRP 21
             W    RT TV  +H     + H+P  PHK          SF RP
Sbjct: 102 CQWN-SCRTTTVKRDHITSHIRVHVPLKPHKCE----FCGKSFKRP 142


>sp|Q8BQ48|K1731_MOUSE Leucine-rich repeat-containing protein KIAA1731
            OS=Mus musculus GN=Kiaa1731 PE=2 SV=3
          Length = 2412

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
 Frame = -3

Query: 131  RTLTVEHTALLAQNHLPRLPHKLHGSV--------AAASSSFPRPC 18
            RTL + HTAL  QN+L   P  LH           A     FPRPC
Sbjct: 1389 RTLGLSHTALPQQNNLTAHPEHLHAQTNFFHSTEKAQEGLVFPRPC 1434


>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription
            subunit 12 OS=Neurospora crassa GN=srb-8 PE=3 SV=1
          Length = 1789

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 8    QDVNMDEEMRRKQQQQSHEAYEEDEEGGSGP 100
            Q     ++ +++QQQQ ++  ++ ++GG+GP
Sbjct: 1664 QQQQQSQQQQQQQQQQQYQLQQQQQQGGTGP 1694


>sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex
           OS=Bacteroides thetaiotaomicron GN=rex PE=3 SV=1
          Length = 220

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -3

Query: 374 IKQYGTQITIHAQKSYTSTSSKPNGTP-----SSLKMTDEH*LCPWDVSKAVFAARQAIK 210
           +K +G +I        T   +  NG P       LK  +E+     DV   V      I 
Sbjct: 113 LKHFGLEIVAAFDVDPTLVGTNLNGIPIYHSDDFLKKMEEY-----DVQIGVLTVPIEIA 167

Query: 209 RNLFLTPVEGGELLKWNFNPTWTFISRTLTVEHTALLAQNHLPRLPHKLH 60
           + +    V+GG    WNF P    +   + V++T+L A  HL  + ++L+
Sbjct: 168 QCITDMMVDGGIKAVWNFTPFRIRVPEDIVVQNTSLYA--HLAVMFNRLN 215
tr_hit_id A7PKE8
Definition tr|A7PKE8|A7PKE8_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 63.5
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947772|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P06, 5'
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PKE8|A7PKE8_VITVI Chromosome chr15 scaffold_19, whole genom...    64   5e-09
tr|A9PG12|A9PG12_POPTR Putative uncharacterized protein OS=Popul...    63   8e-09
tr|B4FJC3|B4FJC3_MAIZE Putative uncharacterized protein OS=Zea m...    60   4e-08
tr|Q9ZWK3|Q9ZWK3_SALGI DnaJ homolog OS=Salix gilgiana GN=SGJ3 PE...    59   9e-08
tr|Q39812|Q39812_SOYBN Glycine max clone GMFP1 isoprenylated pro...    59   9e-08
tr|Q0GLI7|Q0GLI7_ALLPO Molecular chaperone DjA2 OS=Allium porrum...    59   2e-07
tr|Q949C1|Q949C1_ORYSA DnaJ-like protein OS=Oryza sativa GN=W930...    58   3e-07
tr|Q6H6G8|Q6H6G8_ORYSJ Putative DnaJ-like protein MsJ1 OS=Oryza ...    58   3e-07
tr|Q0PMD7|Q0PMD7_WHEAT J-domain protein OS=Triticum aestivum GN=...    58   3e-07
tr|Q0DYZ8|Q0DYZ8_ORYSJ Os02g0656500 protein OS=Oryza sativa subs...    58   3e-07
tr|B8AG47|B8AG47_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|Q6F3B0|Q6F3B0_ORYSJ Os03g0787300 protein OS=Oryza sativa subs...    57   3e-07
tr|Q5NKI6|Q5NKI6_ORYSJ Putative DnaJ protein (Fragment) OS=Oryza...    57   3e-07
tr|A2XMP7|A2XMP7_ORYSI Putative uncharacterized protein OS=Oryza...    57   3e-07
tr|Q9S7X7|Q9S7X7_SALGI DnaJ homolog protein OS=Salix gilgiana PE...    57   5e-07
tr|A9TW48|A9TW48_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|A9RML5|A9RML5_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|A9T6M4|A9T6M4_PHYPA Predicted protein OS=Physcomitrella paten...    56   1e-06
tr|A9NK86|A9NK86_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|B7FGC0|B7FGC0_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|Q7X6U9|Q7X6U9_ORYSJ OSJNBb0034G17.1 protein (Putative unchara...    55   2e-06
tr|Q0JB88|Q0JB88_ORYSJ Os04g0549600 protein OS=Oryza sativa subs...    55   2e-06
tr|Q01ID9|Q01ID9_ORYSA OSIGBa0134H18.3 protein OS=Oryza sativa G...    55   2e-06
tr|A2XW64|A2XW64_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A9SP23|A9SP23_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|Q9ZSZ6|Q9ZSZ6_HEVBR DnaJ protein OS=Hevea brasiliensis PE=2 SV=1    54   5e-06
tr|Q9FSF2|Q9FSF2_TOBAC Putative DNAJ protein OS=Nicotiana tabacu...    53   7e-06
tr|A5C8A7|A5C8A7_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|B0FFN7|B0FFN7_ORYSJ DnaJ family heat shock protein OS=Oryza s...    53   9e-06
tr|Q9M554|Q9M554_EUPES DnaJ protein OS=Euphorbia esula PE=2 SV=1       51   2e-05

>tr|A7PKE8|A7PKE8_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019136001
           PE=4 SV=1
          Length = 419

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 121
           L DVN++EEMRRKQQQQ HEAY+ED++    PRVQCAQQ
Sbjct: 381 LYDVNIEEEMRRKQQQQQHEAYDEDDDDFGAPRVQCAQQ 419


>tr|A9PG12|A9PG12_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 422

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/41 (73%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEE--GGSGPRVQCAQQ 121
           L DVN++EEMRRKQQQQ+ EAY+ED+E  GG G RVQCAQQ
Sbjct: 382 LHDVNIEEEMRRKQQQQAQEAYDEDDEMHGGGGQRVQCAQQ 422


>tr|B4FJC3|B4FJC3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 121
           L DVN++EEMRR+QQQ+  EAY+EDEE  + PRVQCAQQ
Sbjct: 384 LHDVNIEEEMRRRQQQKKQEAYDEDEEEDAQPRVQCAQQ 422


>tr|Q9ZWK3|Q9ZWK3_SALGI DnaJ homolog OS=Salix gilgiana GN=SGJ3 PE=2
           SV=1
          Length = 420

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 29/40 (72%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEE-GGSGPRVQCAQQ 121
           L DVN+DEEMRRKQQQQ+ EAY+ED+E  G   RVQCAQQ
Sbjct: 381 LHDVNIDEEMRRKQQQQAQEAYDEDDEMPGGAQRVQCAQQ 420


>tr|Q39812|Q39812_SOYBN Glycine max clone GMFP1 isoprenylated
           protein (Fragment) OS=Glycine max PE=2 SV=1
          Length = 86

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 121
           L DVN  EEMRRKQQQQ  EAY+ED++  SG RVQCAQQ
Sbjct: 48  LHDVNFKEEMRRKQQQQYREAYDEDDDEPSGQRVQCAQQ 86


>tr|Q0GLI7|Q0GLI7_ALLPO Molecular chaperone DjA2 OS=Allium porrum
           PE=2 SV=1
          Length = 418

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/40 (67%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 121
           + DVN++EEMRRKQ Q + EAY+ED+EG G G RVQCAQQ
Sbjct: 379 MHDVNIEEEMRRKQHQHAQEAYDEDDEGHGGGQRVQCAQQ 418


>tr|Q949C1|Q949C1_ORYSA DnaJ-like protein OS=Oryza sativa
           GN=W930ERIPDK PE=4 SV=1
          Length = 420

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEE--DEEGGSGPRVQCAQQ 121
           + DVN++EEMRR+QQ +  EAY+E  DE+ G+GPRVQCAQQ
Sbjct: 380 MHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 420


>tr|Q6H6G8|Q6H6G8_ORYSJ Putative DnaJ-like protein MsJ1 OS=Oryza
           sativa subsp. japonica GN=P0519E06.27 PE=4 SV=1
          Length = 416

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEE--DEEGGSGPRVQCAQQ 121
           + DVN++EEMRR+QQ +  EAY+E  DE+ G+GPRVQCAQQ
Sbjct: 376 MHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 416


>tr|Q0PMD7|Q0PMD7_WHEAT J-domain protein OS=Triticum aestivum GN=J3
           PE=2 SV=1
          Length = 420

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/39 (66%), Positives = 34/39 (87%), Gaps = 2/39 (5%)
 Frame = +2

Query: 11  DVNMDEEMRRKQQQQSHEAYEEDEE--GGSGPRVQCAQQ 121
           D++++EEMRR+QQQQ+ EAY+EDE+  GG G RVQCAQQ
Sbjct: 382 DIDIEEEMRRRQQQQAQEAYDEDEDMPGGGGQRVQCAQQ 420


>tr|Q0DYZ8|Q0DYZ8_ORYSJ Os02g0656500 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0656500 PE=4 SV=1
          Length = 420

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 2/41 (4%)
 Frame = +2

Query: 5   LQDVNMDEEMRRKQQQQSHEAYEE--DEEGGSGPRVQCAQQ 121
           + DVN++EEMRR+QQ +  EAY+E  DE+ G+GPRVQCAQQ
Sbjct: 380 MHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 420