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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947784
Clone id YMU02A01NGRL0016_P21
Library
Length 230
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0016_P21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAACGACGATTTGGTGAGGCAGGAGCTCAGGTGCTGCGATCTAATTCGGGTACCTTATA
ACTATGGCTCGCGGGAGAAATTTCAAGCGTGGAGGAGGTGCTAAGACAAAGATACAAAAG
TCTGAGTCTGATGTGAACGCTAAGCCAGAGCCTGAGGTTGCTGTGAAGGAGACACCTAAA
GTGAAGGCAGCAAATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A5DBE7
Definition sp|A5DBE7|IRS4_PICGU Increased rDNA silencing protein 4 OS=Pichia guilliermondii
Align length 51
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947784|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P21, 5'
         (198 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5DBE7|IRS4_PICGU Increased rDNA silencing protein 4 OS=Pichi...    30   4.9  

>sp|A5DBE7|IRS4_PICGU Increased rDNA silencing protein 4 OS=Pichia
           guilliermondii GN=IRS4 PE=3 SV=2
          Length = 667

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 46  FGYLITMARGRNFKRGGGAKTKIQKSESDVNAKPEPEVAVKETPKVKAANG 198
           F Y++T   G ++  GGG++ KI   E D + K     A ++   V  ANG
Sbjct: 519 FNYVVTRINGIDYGSGGGSEQKIIVDEED-SMKAARLSAKQQADTVSGANG 568
tr_hit_id A0ZFL3
Definition tr|A0ZFL3|A0ZFL3_NODSP Putative uncharacterized protein OS=Nodularia spumigena CCY 9414
Align length 32
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947784|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0016_P21, 5'
         (198 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0ZFL3|A0ZFL3_NODSP Putative uncharacterized protein OS=Nodul...    33   9.3  

>tr|A0ZFL3|A0ZFL3_NODSP Putative uncharacterized protein
           OS=Nodularia spumigena CCY 9414 GN=N9414_01275 PE=4 SV=1
          Length = 320

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 191 AAFTLGVSFTATSGSGLAFTSDSDFCIFVLAP 96
           A  +LG  F A SG  L++ +D+D CI+V  P
Sbjct: 66  ATKSLGYQFDAESGQKLSYATDADICIWVYTP 97