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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947793
Clone id YMU02A01NGRM0001_A08
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_A08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATTAGATAAAAGGCCGATGCGGGCTTGCCCGGTAATGCGGTGAATCATGATAACTCAAC
GAATCGCACGGCCTTGGCGCCGGCGATGCTTCATTCAAATTTCTGCCCTATCAACTTTCG
ATGGTAGGATAGAGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCC
GGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTAC
CCAATCCCGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTTTTTCAAGTCTG
GTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGG
TGCCAGCAGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTTAAGTTGTTGCAGTTAAAA
AGCTCGTAGTTGGATCTCGGGGCGGGGCGAGCGGTCCGCCTCTTTTGGTGTGCACTGGTC
GCTCCGCCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAATTGGCTGGGACGCGGATTCGG
CGATGTTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGAATACATTAGC
ATG
■■Homology search results ■■ -
sp_hit_id Q9Y794
Definition sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
Align length 48
Score (bit) 33.9
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947793|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_A08, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    34   0.66 
sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ...    32   1.9  
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech...    32   1.9  
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ...    32   3.3  
sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus...    32   3.3  
sp|Q9Z2H5|E41L1_MOUSE Band 4.1-like protein 1 OS=Mus musculus GN...    32   3.3  
sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens GN...    32   3.3  
sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein...    31   5.5  
sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=...    30   7.2  
sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus n...    30   7.3  
sp|Q9V8R9|41_DROME Protein 4.1 homolog OS=Drosophila melanogaste...    30   7.3  
sp|P13916|GLCA_SOYBN Beta-conglycinin, alpha chain OS=Glycine ma...    30   9.5  

>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 33.9 bits (76), Expect = 0.66
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 573 FEHSNFFKVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEIQ 430
           F+ +N    T   P PS LR    PR++GR  +  PK  D    P I+
Sbjct: 76  FQDNNISTTTLAPPSPSPLRLNEAPRRRGRPRKYPPKPIDEGSEPIIK 123


>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
           Rice) PE=3 SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -1

Query: 543 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRP 439
           SP PRP   RP  RPR K      TP   DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
          Length = 1104

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 552 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEI 433
           K T+P PRP+  RP  RP   G   + TP +    P+P+I
Sbjct: 186 KPTAPTPRPTPARPTPRPAGAGSPARPTPGQG--QPKPQI 223


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
           member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
          Length = 994

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 552 KVTSPNPR-PSQLRPGARPRQKGRSDQCTPKEADRSPR 442
           + TSP PR P    P A+    G  D C+PK  + SPR
Sbjct: 880 ETTSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus
           GN=Epb41l1 PE=1 SV=1
          Length = 879

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 576 CFEHSNFFKVTSPNPRPSQ-LRPGARPRQKGRSDQCTPKEADRSPRP 439
           C EH  FF++ SP P P   L  G++ R  GR+   T + +    RP
Sbjct: 367 CIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRP 413


>sp|Q9Z2H5|E41L1_MOUSE Band 4.1-like protein 1 OS=Mus musculus
           GN=Epb41l1 PE=1 SV=2
          Length = 879

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 576 CFEHSNFFKVTSPNPRPSQ-LRPGARPRQKGRSDQCTPKEADRSPRP 439
           C EH  FF++ SP P P   L  G++ R  GR+   T + +    RP
Sbjct: 367 CIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRP 413


>sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens
           GN=EPB41L1 PE=1 SV=2
          Length = 881

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 576 CFEHSNFFKVTSPNPRPSQ-LRPGARPRQKGRSDQCTPKEADRSPRP 439
           C EH  FF++ SP P P   L  G++ R  GR+   T + +    RP
Sbjct: 367 CIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRP 413


>sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Bigelowiella natans GN=psaB PE=3 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 201 GYHIQGRQQARKLPNPDTGR**Q*ITILGFFKSGNWNEYNLNPLTRIH 344
           G HI+       LP+PD          L  F SGNW+ Y+ NP T  H
Sbjct: 205 GQHIRWNNYLSTLPHPDG---------LAPFFSGNWSAYSTNPDTFNH 243


>sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 419

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 155 VTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQVW 301
           ++E  G    +  +  L  P +    Q+T S H    + NNN G+FQ+W
Sbjct: 41  LSEKDGVAGGKTNKNHLESPAEQLVLQLTVSEHAHSRSQNNNQGVFQLW 89


>sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus
           norvegicus GN=Kprp PE=2 SV=1
          Length = 699

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 540 PNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPE 436
           P PRP    P   PR + R D C   E    PRPE
Sbjct: 466 PRPRPEPC-PSPEPRPRPRPDPCPSPELRPRPRPE 499
tr_hit_id A8P6U5
Definition tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment) OS=Brugia malayi
Align length 57
Score (bit) 91.3
E-value 4.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947793|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_A08, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragmen...    91   4e-17
tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragmen...    59   7e-16
tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    81   5e-14
tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment) O...    80   7e-14
tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugi...    69   4e-13
tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe) OS=Xen...    68   4e-10
tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein OS...    66   2e-09
tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens...    54   2e-09
tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc...    64   5e-09
tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugi...    59   3e-07
tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza...    54   9e-06
tr|A8P366|A8P366_BRUMA Putative uncharacterized protein OS=Brugi...    54   9e-06
tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale...    53   1e-05
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    52   3e-05
tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein OS=Trich...    49   3e-04
tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein OS=Trich...    48   5e-04
tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugi...    39   0.18 
tr|Q7M4B1|Q7M4B1_TRYCR Probable flagellar protein (Clone FCH-F8-...    37   1.2  
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob...    35   2.6  
tr|Q7RN92|Q7RN92_PLAYO Putative uncharacterized protein PY01929 ...    28   4.2  
tr|B7Q520|B7Q520_IXOSC Protein 4.1G, putative OS=Ixodes scapular...    34   7.6  
tr|B6PIW1|B6PIW1_BRAFL Putative uncharacterized protein (Fragmen...    34   7.6  
tr|B6M328|B6M328_BRAFL Putative uncharacterized protein OS=Branc...    34   7.6  

>tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_17870 PE=4 SV=1
          Length = 62

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)
 Frame = -1

Query: 243 WVICAPAAFLGCGSRFSGSLSGIEP*FSVTRHHHGRPLSYHRKLIGQKFE*SIAGAK 73
           WVICAPAAFLGCGSRFSGSLSG+EP FSVTR++HGR ++YHRKLI Q  +  +AG +
Sbjct: 1   WVICAPAAFLGCGSRFSGSLSGVEPLFSVTRYNHGRHINYHRKLIRQTLDRYVAGTR 57


>tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_02890 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(3) = 7e-16
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +2

Query: 188 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 295
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 39.3 bits (90), Expect(3) = 7e-16
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +1

Query: 82  GDASFKFLPYQLSMVG*RPTMVVTGDGE 165
           GD S K LPYQLSMV   PTMVVTG+ E
Sbjct: 9   GDVSIKCLPYQLSMVVYVPTMVVTGEPE 36



 Score = 28.9 bits (63), Expect(3) = 7e-16
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 291 FKSGNWNEYNLNPLTRIHWRAS 356
           F++G  N YNLN LTRI+ RAS
Sbjct: 68  FEAGYRNGYNLNLLTRIYERAS 89


>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
          Length = 87

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = -2

Query: 443 APRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 333
           A   +  LFNCNNLNIRYWSWNYRGCWHQTCPPMDPR
Sbjct: 51  ADSESQTLFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 87


>tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment)
           OS=Helicoverpa armigera PE=2 SV=1
          Length = 47

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 39/44 (88%), Positives = 39/44 (88%)
 Frame = +2

Query: 137 LPWW*RVTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVT 268
           LPW  RVT N GSIPEREPEKRLPHPRKAAGAQIT SRHGEVVT
Sbjct: 4   LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVT 47


>tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_05555 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect(2) = 4e-13
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = +2

Query: 170 GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 295
           GS PEREPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 15  GSTPEREPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 56



 Score = 28.9 bits (63), Expect(2) = 4e-13
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 291 FKSGNWNEYNLNPLTRIHWRAS 356
           F++G  N YNLN LTRI+ RAS
Sbjct: 55  FEAGYRNGYNLNLLTRIYERAS 76


>tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe)
           OS=Xenopus tropicalis GN=chek1 PE=2 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +2

Query: 188 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 295
           EPEKRLPHPRKAAGAQIT SR GEVVT NNNTGLF+
Sbjct: 187 EPEKRLPHPRKAAGAQITHSRRGEVVTKNNNTGLFR 222


>tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein
           OS=Ornithoctonus huwena PE=4 SV=1
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = +1

Query: 82  GDASFKFLPYQLSMVG*RPTMVVTGDGELGFDSGEGA 192
           GDASFK LPYQLSMVG  PTMVVTG+GE GFDSGEGA
Sbjct: 41  GDASFKCLPYQLSMVGYAPTMVVTGNGESGFDSGEGA 77


>tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens
           GN=TRIADDRAFT_62277 PE=4 SV=1
          Length = 206

 Score = 53.5 bits (127), Expect(2) = 2e-09
 Identities = 32/73 (43%), Positives = 38/73 (52%)
 Frame = -3

Query: 502 SPTERAERPVHTKRGGPLAPPRDPTTSFLXXXXXXXXXXXXXXXXXXTRLALQWILVKGF 323
           SP E  +   ++  GGP    R+PTTSFL                  TRLALQWILVKGF
Sbjct: 120 SPQEEEQIIQYSPLGGPSDSFRNPTTSFLTATTLIYAIGAGITAAAGTRLALQWILVKGF 179

Query: 322 RLYSFQLPDLKKP 284
           +LYSF+L     P
Sbjct: 180 KLYSFRLRSQMAP 192



 Score = 31.2 bits (69), Expect(2) = 2e-09
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 299 RLEKAQYCYLLSLPPRVGIG 240
           R + A Y Y LSLPPRVGIG
Sbjct: 187 RSQMAPYRYFLSLPPRVGIG 206


>tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122937 PE=4 SV=1
          Length = 291

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 579 ACFEHSNFFKVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEIQLRAF 418
           ACFEHSNFFKV +P PR +QLR   R R++G     T   ADR P P+IQLRAF
Sbjct: 238 ACFEHSNFFKVNAPAPRGAQLRGPGRIRREGPGRAVTRLAADRKPGPKIQLRAF 291


>tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_07595 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +2

Query: 188 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 295
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 38.5 bits (88), Expect = 0.30
 Identities = 34/94 (36%), Positives = 44/94 (46%)
 Frame = +3

Query: 75  WRRRCFIQISALSTFDGRIEAYHXXXXXXXXXXXXXXXXXXNGYHIQGRQQARKLPNPDT 254
           +RRR + Q+SALSTFDG + AYH                   G  I   Q    +   + 
Sbjct: 8   YRRRIY-QVSALSTFDGSLCAYHGCNGEPEKRLPHPRKAA--GAQITHSQNEEVVTKNNE 64

Query: 255 GR**Q*ITILGFFKSGNWNEYNLNPLTRIHWRAS 356
                  T+L  F++G  N YNLN LTRI+ RAS
Sbjct: 65  -------TVL--FEAGYRNGYNLNLLTRIYERAS 89