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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947801
Clone id YMU02A01NGRM0001_B06
Library
Length 269
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_B06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCCAAGATCTTGCTAAGAAAACGAATGTGCCTTTCCTCACCGATGATCTGAAGATAGA
GTGTGAAGGCAAGGAGAAGTACAAGTGCGCATCCAATGTTTTCTGGAAGTGGTGAGAGGA
GCTGTTGAATGGGCTGGGTAGTTAGTTGCCTCTTGTTCATAACCAGATTGCTGAGCCCCC
GGTTTCTTTGTCGAAATTATATCAGATTTGGATGAATATAGATATGCTCTTTTCTGCTGT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P31093
Definition sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare
Align length 37
Score (bit) 74.7
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947801|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_B06, 5'
         (240 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, ch...    75   1e-13
sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, ch...    73   4e-13
sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, ch...    70   4e-12
sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, ch...    39   0.011
sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys tri...    29   6.4  

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N,
           chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF+TDDL+IECEGKEK+KC SNVFWKW
Sbjct: 109 CQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N,
           chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF++DDL+IECEGKEK+KC SNVFWKW
Sbjct: 76  CQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112


>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N,
           chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF+++D+ +ECEGK+KYKC SNVFWKW
Sbjct: 135 CQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N,
           chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCAS 94
           C++LA    V ++ +DLKIECEGK+   C S
Sbjct: 102 CEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132


>sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys
           tristis PE=1 SV=2
          Length = 79

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNV 100
           C    ++ NVPFL D+ +++C G ++Y C  N+
Sbjct: 15  CTFAEEQVNVPFLPDEREVKCIGWQEY-CRGNL 46
tr_hit_id Q2QWN3
Definition tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subsp. japonica
Align length 37
Score (bit) 74.7
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947801|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_B06, 5'
         (240 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subs...    75   2e-12
tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N O...    74   4e-12
tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea...    74   5e-12
tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N O...    73   6e-12
tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus vulg...    73   8e-12
tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center su...    72   1e-11
tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome...    72   1e-11
tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Popul...    72   1e-11
tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Popul...    70   4e-11
tr|B8LK70|B8LK70_PICSI Putative uncharacterized protein OS=Picea...    67   4e-10
tr|A3CFM0|A3CFM0_ORYSJ Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|B8YAB7|B8YAB7_9POAL Chloroplast photosystem I subunit N (Frag...    53   9e-06
tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I polypeptide OS...    39   0.098
tr|Q9AXJ2|Q9AXJ2_CHLRE PsaN OS=Chlamydomonas reinhardtii GN=psaN...    38   0.22 
tr|Q1WLU5|Q1WLU5_CHLIN Chloroplast photosystem I subunit N OS=Ch...    38   0.22 
tr|A8I835|A8I835_CHLRE Photosystem I reaction center subunit N O...    38   0.22 
tr|Q017X3|Q017X3_OSTTA PSAN_VOLCA Photosystem I reaction centre ...    36   0.83 
tr|A9BKZ2|A9BKZ2_9CRYP Putative uncharacterized protein OS=Crypt...    34   3.1  

>tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0189400 PE=2 SV=1
          Length = 149

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF++DDL+IECEGKEKYKC SNVFWKW
Sbjct: 113 CQDLAKQKKVPFISDDLEIECEGKEKYKCGSNVFWKW 149


>tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37722 PE=4 SV=1
          Length = 144

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF++DDL+IECEGKEKYKC SNVFWKW
Sbjct: 108 CQDLAKQKKVPFISDDLEIECEGKEKYKCGSNVFWKW 144


>tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPFL+DDL+IECEGKEK+KC SNVFWKW
Sbjct: 109 CQDLAKQKKVPFLSDDLEIECEGKEKFKCGSNVFWKW 145


>tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK  NVPFL++D+K+ECEGK+KYKC SNVFWKW
Sbjct: 137 CQDLAKIKNVPFLSEDMKLECEGKDKYKCGSNVFWKW 173


>tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF++DDL+IECEGKEK+KC SNVFWKW
Sbjct: 109 CQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 145


>tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus
           vulgaris GN=PSI-N PE=1 SV=1
          Length = 170

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPFL+DDL +ECEGK+KYKC SNVFWKW
Sbjct: 134 CQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170


>tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center
           subunit N (Fragment) OS=Vitis vinifera GN=PsaN PE=2 SV=1
          Length = 85

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAKK  VPFL++DL++ECEG++KYKC SNVFWKW
Sbjct: 49  CQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 85


>tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034797001
           PE=4 SV=1
          Length = 173

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAKK  VPFL++DL++ECEG++KYKC SNVFWKW
Sbjct: 137 CQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173


>tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 172

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF++DDL +ECEGK+KYKC SNVFWKW
Sbjct: 136 CQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172


>tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 172

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +2

Query: 2   CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNVFWKW 112
           CQDLAK+  VPF+++DL +ECEGK+KYKC SNVFWKW
Sbjct: 136 CQDLAKQKKVPFISEDLALECEGKDKYKCGSNVFWKW 172