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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947809
Clone id YMU02A01NGRM0001_C04
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_C04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGGGTCTGGTAGTTTTTTGTGTGTTTTGATGCTTCGGATGATATTATCTAGAGTGTTGCA
GACATGGGTTTTGGATAGACGGTGGCGCGGTTTCGCTGTGCTTCCTCCTCTTACCGGCCT
TTTCTATTTACATGAACTTTGCCTAAGTAACTGATAATGTAGACAACTATGTTGTTTTGT
TTTCTCCTGAATATTATGTTGAGGCTTTTCCTTTGCTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6PEH9
Definition sp|Q6PEH9|S39AA_DANRE Zinc transporter ZIP10 OS=Danio rerio
Align length 39
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947809|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_C04, 5'
         (220 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PEH9|S39AA_DANRE Zinc transporter ZIP10 OS=Danio rerio GN=s...    30   4.8  
sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47 O...    29   6.3  

>sp|Q6PEH9|S39AA_DANRE Zinc transporter ZIP10 OS=Danio rerio
           GN=slc39a10 PE=2 SV=1
          Length = 847

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 127 IEKAGKRRKHSETAPPSIQNPCLQHSR*YHPKHQNTQKT 11
           +E    R  HS   P S QNP + H    H  H+N + T
Sbjct: 131 LEVQDGRHSHSAGHPHSHQNPNISHKTHQHSHHENEEHT 169


>sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47
           OS=Danio rerio GN=ccdc47 PE=2 SV=1
          Length = 486

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 173 NIVVYIISYLGKVHVNRKGR*EEEAQRNRATV 78
           N+V+Y I  + K+ +NR+G+  ++A RNRA V
Sbjct: 387 NMVIYSIDKVKKLRLNREGK--QKADRNRARV 416
tr_hit_id B1PID4
Definition tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens
Align length 39
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947809|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_C04, 5'
         (220 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) ...    33   5.5  

>tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment)
           OS=Cupressus sempervirens PE=2 SV=1
          Length = 138

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
 Frame = +2

Query: 2   GSGSFLCV-------LMLRMILSRVLQTWVLDRRWRGFA 97
           G  S+LC+       L++R  ++R +QTWVLDRRW   A
Sbjct: 92  GHLSWLCLSRPIAQDLLVRCSVARRMQTWVLDRRWHHIA 130