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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947813
Clone id YMU02A01NGRM0001_C08
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRM0001_C08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGGACCTCAGATCAGGCAAGGCTACCCGCTGAGTTTAAGCATATCACTAAGCGGAGGAA
AAGAAACTAACAAGGATTTCCCTAGTAGCGGCGAGCGAACCGGAAAGAGCCCAGCTTGAG
AATCGCGCGGCCCCGCCGTGCGAATTGTAGTCTGGAGAGGCGTCCTCTGCGACGGACCGG
GCCCAAGTCCCCTGGAAAGGGGCGTCAGAGAGGGTGAGAGCCCCGTCGAGCCCGGACCCT
GTCGCTCCACGAGGCGCCGTCGACGAGTCGGGCTGTTTGGGAATGCAGCCCTAAGTGGGT
GGTAGATTCCATCCAAGGCTAAATACGGGCAAGAGACCGATAGCGAACAAGTACCGCGAG
GGAAAGATGAAAAGGACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6CQE5
Definition sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis
Align length 41
Score (bit) 65.5
E-value 8.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947813|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_C08, 5'
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR...    65   8e-11
sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae GN...    65   1e-10
sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma...    34   0.26 
sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma...    34   0.26 
sp|Q8UJ51|IF2_AGRT5 Translation initiation factor IF-2 OS=Agroba...    32   0.97 
sp|Q8K1S7|KREM2_MOUSE Kremen protein 2 OS=Mus musculus GN=Kremen...    32   1.3  
sp|Q9NUP1|CNO_HUMAN Protein cappuccino homolog OS=Homo sapiens G...    32   1.3  
sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculu...    31   1.7  
sp|Q2KVJ9|MNMC_BORA1 tRNA 5-methylaminomethyl-2-thiouridine bios...    30   2.8  
sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus...    30   3.7  
sp|O83940|Y975_TREPA UPF0011 protein TP_0975 OS=Treponema pallid...    30   3.7  
sp|P05539|CO2A1_RAT Collagen alpha-1(II) chain OS=Rattus norvegi...    30   3.7  
sp|P28481|CO2A1_MOUSE Collagen alpha-1(II) chain OS=Mus musculus...    30   3.7  
sp|Q8NCW0|KREM2_HUMAN Kremen protein 2 OS=Homo sapiens GN=KREMEN...    30   3.7  
sp|A2AAY5|SPD2B_MOUSE SH3 and PX domain-containing protein 2B OS...    30   4.8  
sp|Q31FH4|Y1507_THICR Maf-like protein Tcr_1507 OS=Thiomicrospir...    30   4.8  
sp|O76368|COL99_CAEEL Putative cuticle collagen 99 OS=Caenorhabd...    29   6.3  
sp|P02458|CO2A1_HUMAN Collagen alpha-1(II) chain OS=Homo sapiens...    29   6.3  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    29   6.3  
sp|Q8TEQ6|GEMI5_HUMAN Gem-associated protein 5 OS=Homo sapiens G...    29   6.3  
sp|P13828|MSP1_PLAYO Merozoite surface protein 1 OS=Plasmodium y...    29   8.2  
sp|Q8N319|CF223_HUMAN Uncharacterized protein C6orf223 OS=Homo s...    29   8.2  
sp|A2VDR9|ZN750_BOVIN Protein ZNF750 OS=Bos taurus GN=ZNF750 PE=...    29   8.2  

>sp|Q6CQE5|TAR1_KLULA Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A
           PE=4 SV=2
          Length = 109

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/41 (78%), Positives = 34/41 (82%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRR 257
           K FSSF   TCSLSVS  YLALDGIYHPLRAAFPN+ TRR+
Sbjct: 21  KFFSSFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTRRK 61


>sp|Q8TGM6|TAR1_YEAST Protein TAR1 OS=Saccharomyces cerevisiae
           GN=TAR1 PE=2 SV=1
          Length = 124

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 32/47 (68%), Positives = 35/47 (74%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLVERQ 239
           K FSSF   TCSLSVS  YLALDGIYHPLRAAFPN+ T RR   + +
Sbjct: 36  KFFSSFHHCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNR 82


>sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma
            OS=Mus musculus GN=Cdc42bpg PE=2 SV=2
          Length = 1551

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWRGVLCD--GPGPSPLERGVREGESPVEPGPCRSTXXXXXVGLFGNAAL 293
            ++R P + + V R VLC   GPGP P +R +RE ++P              VG  G  AL
Sbjct: 1188 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPAPVQSLGLLGDRLCVGAAGTFAL 1247


>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma
            OS=Homo sapiens GN=CDC42BPG PE=1 SV=1
          Length = 1551

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 120  ESRGPAVRIVVWRGVLCD--GPGPSPLERGVREGESPVEPGPCRSTXXXXXVGLFGNAAL 293
            ++R P + + V R VLC   GPGP P +R +RE ++P              VG  G  AL
Sbjct: 1189 QARTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPATVQSLGLLGDRLCVGAAGGFAL 1248


>sp|Q8UJ51|IF2_AGRT5 Translation initiation factor IF-2
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=infB PE=3 SV=1
          Length = 913

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = +1

Query: 85  VAASEPERAQLENRAAPPCEL*SGEASSATDRAQVPWKGASERVRAPSSPDPVAPRG 255
           VAAS+P     E RA P  E  +  A+ A      P   A+    AP++PD  APRG
Sbjct: 187 VAASQPAA---EVRAEPASERPAAAAAPAPRTDARPQSAAAAPRSAPATPDAAAPRG 240


>sp|Q8K1S7|KREM2_MOUSE Kremen protein 2 OS=Mus musculus GN=Kremen2
           PE=1 SV=1
          Length = 461

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -2

Query: 239 GSGLDGALTLSDAPFQGTWARSVAEDASPDYNSHGGAARFSSWALSGSLAATREILVSFF 60
           G G  G   +S    QG W+       SPD+    G  R  SW L G L A  E+    F
Sbjct: 204 GDGRLGIYEVSVGSCQGNWSAPQGVIYSPDFPDEYGPDRNCSWVL-GQLGAVLELTFRLF 262

Query: 59  SSA 51
             A
Sbjct: 263 ELA 265


>sp|Q9NUP1|CNO_HUMAN Protein cappuccino homolog OS=Homo sapiens
           GN=CNO PE=1 SV=1
          Length = 217

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 290 GCIPKQPDSSTAPRGATGSGLDGALTLSDAPFQGTWARSVAEDASP 153
           G +P+       P+GA  SG  G ++ S +   G W    AED +P
Sbjct: 9   GALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54


>sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculus
           GN=Prox2 PE=2 SV=1
          Length = 593

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 173 RTGPKSPGKGRQRG*EPRRARTLSLHEAPSTSRAVWECSPK 295
           R   + P KGR+R    +R ++L +H+ P  S   WE  PK
Sbjct: 89  RESLRCPEKGRER----KRKQSLPMHQGPLKSSPAWERGPK 125


>sp|Q2KVJ9|MNMC_BORA1 tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC OS=Bordetella
           avium (strain 197N) GN=mnmC PE=3 SV=1
          Length = 614

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 281 PKQPDSSTAPRGATGSGLDGALTLSDAPFQGTWARSVAEDASPDYNSHGG 132
           P++ D+  AP    G+GL GA        +G   R +AE A P    HGG
Sbjct: 246 PRRTDAPDAPVLVVGAGLAGAGMAQALALRGLSVRVIAESAQP----HGG 291


>sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus
           GN=Znf689 PE=2 SV=1
          Length = 500

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 219 SHPL*RPFPGDLGPVRRRGRLSR-LQFA 139
           S PL    PG++GP RRRGR  R L+FA
Sbjct: 5   SAPLLEQAPGEVGPTRRRGRRPRALKFA 32
tr_hit_id A5BKB8
Definition tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 103
Score (bit) 130.0
E-value 4.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947813|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRM0001_C08, 5'
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis...   130   4e-29
tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01...    89   1e-16
tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematoste...    78   2e-13
tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematoste...    78   2e-13
tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematoste...    78   2e-13
tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematoste...    78   2e-13
tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematoste...    78   2e-13
tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematoste...    77   3e-13
tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematoste...    75   2e-12
tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematoste...    75   2e-12
tr|A7S3R0|A7S3R0_NEMVE Predicted protein (Fragment) OS=Nematoste...    75   2e-12
tr|A7T1X8|A7T1X8_NEMVE Predicted protein (Fragment) OS=Nematoste...    72   2e-11
tr|A8DWE6|A8DWE6_NEMVE Predicted protein (Fragment) OS=Nematoste...    71   3e-11
tr|A9TBN2|A9TBN2_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   2e-10
tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella paten...    67   3e-10
tr|Q3KTL6|Q3KTL6_SCHJA SJCHGC01393 protein OS=Schistosoma japoni...    64   4e-09
tr|B1N5S6|B1N5S6_ENTHI Putative uncharacterized protein OS=Entam...    64   4e-09
tr|A9PE13|A9PE13_POPTR Putative uncharacterized protein OS=Popul...    59   9e-08
tr|A8NLF8|A8NLF8_BRUMA Putative uncharacterized protein (Fragmen...    59   9e-08
tr|A5AFX7|A5AFX7_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|Q223Q7|Q223Q7_TETTH Putative uncharacterized protein OS=Tetra...    55   2e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    36   4e-05
tr|A5B938|A5B938_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|A8PGP3|A8PGP3_BRUMA Putative uncharacterized protein OS=Brugi...    43   0.009
tr|A1CUU5|A1CUU5_NEOFI Putative uncharacterized protein OS=Neosa...    42   0.012
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    39   0.017
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    39   0.018
tr|B6LZP2|B6LZP2_BRAFL Putative uncharacterized protein OS=Branc...    41   0.033
tr|Q652R5|Q652R5_ORYSJ Putative uncharacterized protein P0603C10...    35   0.059
tr|A4XBY0|A4XBY0_SALTO Putative uncharacterized protein OS=Salin...    38   0.28 

>tr|A5BKB8|A5BKB8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001840 PE=4 SV=1
          Length = 347

 Score =  130 bits (326), Expect = 4e-29
 Identities = 67/103 (65%), Positives = 73/103 (70%)
 Frame = +1

Query: 73  RISLVAASEPERAQLENRAAPPCEL*SGEASSATDRAQVPWKGASERVRAPSSPDPVAPR 252
           R+ +   + P+         P     SGEASSA DRAQVP KGA ERVRAPS PDPVAPR
Sbjct: 238 RLGVARVTSPQGPPTRTARDPRSRPQSGEASSAADRAQVPXKGAPERVRAPSCPDPVAPR 297

Query: 253 GAVDESGCLGMQP*VGGRFHPRLNTGKRPIANKYREGKMKRTL 381
           GAV ESGC GMQ   GG+F PRLNTG+RPIANK REGKMKRTL
Sbjct: 298 GAVGESGCXGMQXQSGGKFRPRLNTGERPIANKCREGKMKRTL 340


>tr|Q6Z8F0|Q6Z8F0_ORYSJ Putative uncharacterized protein P0459B01.18
           OS=Oryza sativa subsp. japonica GN=P0459B01.18 PE=4 SV=1
          Length = 109

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 44/52 (84%), Positives = 44/52 (84%)
 Frame = -2

Query: 227 DGALTLSDAPFQGTWARSVAEDASPDYNSHGGAARFSSWALSGSLAATREIL 72
           DGALTL  APFQGTWARSVAEDASPDYNS G AARFSSWA  GSLA TR IL
Sbjct: 3   DGALTLPGAPFQGTWARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGIL 54


>tr|A7T248|A7T248_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76701 PE=4 SV=1
          Length = 70

 Score = 77.8 bits (190), Expect(2) = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58



 Score = 20.8 bits (42), Expect(2) = 2e-13
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 246 SDRVRARRGSHP 211
           +DR R RRG HP
Sbjct: 59  NDRGRRRRGFHP 70


>tr|A7TCL2|A7TCL2_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g69522 PE=4 SV=1
          Length = 67

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7TAG1|A7TAG1_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g152336 PE=4 SV=1
          Length = 130

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 31  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 74


>tr|A7SUL8|A7SUL8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g76780 PE=4 SV=1
          Length = 70

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A7SPY6|A7SPY6_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g153457 PE=4 SV=1
          Length = 59

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+ +V
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKHIV 58


>tr|A8DVI0|A8DVI0_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g156477 PE=4 SV=1
          Length = 60

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRR 254
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR+R
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRRKR 56


>tr|A7SWL7|A7SWL7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g67728 PE=4 SV=1
          Length = 76

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRRRRLV 248
           K FSSFP GTCSLSVSC YLALDG+Y P  AAFPN+PTRR+ +V
Sbjct: 21  KCFSSFPHGTCSLSVSCQYLALDGVYQPFWAAFPNNPTRRKHIV 64


>tr|A7SQ02|A7SQ02_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g126693 PE=4 SV=1
          Length = 54

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 33/40 (82%), Positives = 35/40 (87%)
 Frame = -3

Query: 379 KSFSSFPRGTCSLSVSCPYLALDGIYHPLRAAFPNSPTRR 260
           K FSSFP GTCSLSVSC YLALDG+YHP  AAFPN+PTRR
Sbjct: 15  KCFSSFPHGTCSLSVSCQYLALDGVYHPFWAAFPNNPTRR 54